RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 TAS2R42Q7RTR8 314 aa17.09■□□□□ 0.33
CCDC28B-202ENST00000421922 CILP2Q8IUL8 1156 aa17.09■□□□□ 0.33
CCDC28B-202ENST00000421922 DENND6AQ8IWF6 608 aa17.09■□□□□ 0.33
CCDC28B-202ENST00000421922 UBALD2Q8IYN6 164 aa17.09■□□□□ 0.33
CCDC28B-202ENST00000421922 CYP4X1Q8N118 509 aa17.09■□□□□ 0.33
CCDC28B-202ENST00000421922 FAM76AQ8TAV0 307 aa17.09■□□□□ 0.33
CCDC28B-202ENST00000421922 CXorf40AQ8TE69 158 aa17.09■□□□□ 0.33
CCDC28B-202ENST00000421922 TLCD1Q96CP7 247 aa17.09■□□□□ 0.33
CCDC28B-202ENST00000421922 EURLQ9NYK6 297 aa17.09■□□□□ 0.33
CCDC28B-202ENST00000421922 WNT16Q9UBV4 365 aa17.09■□□□□ 0.33
CCDC28B-202ENST00000421922 MMP17Q9ULZ9 603 aa17.09■□□□□ 0.33
CCDC28B-202ENST00000421922 PSAT1Q9Y617 370 aa17.09■□□□□ 0.33
CCDC28B-202ENST00000421922 ADAM23O75077 832 aa17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 PRAMEF1O95521 474 aa17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 ITGA2BP08514 1039 aa17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 C1SP09871 688 aa17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 CHRM1P11229 460 aaPredicted RBP17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 ACADMP11310 421 aa17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 PSMA3P25788 255 aa17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 TTPAP49638 278 aa17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 STC1P52823 247 aa17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 LIMK2P53671 638 aa17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 RPS14P62263 151 aaKnown RBP17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 CNTN1Q12860 1018 aa17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 ACOX1Q15067 660 aa17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 CDKN3Q16667 212 aa17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 RNF187Q5TA31 235 aaPredicted RBP17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 KIAA1211LQ6NV74 962 aa17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 TRABD2AQ86V40 505 aa17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 CBARPQ8N350 705 aaPredicted RBP17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 SYNPOQ8N3V7 929 aa17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 HDDC3Q8N4P3 179 aa17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 ARFGAP2Q8N6H7 521 aa17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 GPR150Q8NGU9 434 aa17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 SCG3Q8WXD2 468 aaKnown RBP17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 SELENOSQ9BQE4 189 aa17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 CCDC68Q9H2F9 335 aa17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 RHOJQ9H4E5 214 aa17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 FBXO6Q9NRD1 293 aaPredicted RBP17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 CRLS1Q9UJA2 301 aa17.08■□□□□ 0.32
CCDC28B-202ENST00000421922 H0Y858 1186 aa17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 PSMD11O00231 422 aa17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 PLK4O00444 970 aa17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 NDUFS3O75489 264 aa17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 RNASEH2AO75792 299 aaKnown RBP17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 SRP72O76094 671 aaKnown RBP17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 BPIP17213 487 aa17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 NR1D1P20393 614 aa17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 P2RY2P41231 377 aa17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 SPINT3P49223 89 aa17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 METAP1P53582 386 aa17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 SLC12A2P55011 1212 aa17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 DNAJC3Q13217 504 aa17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 ZNF284Q2VY69 593 aa17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 GALNT7Q86SF2 657 aa17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 TMPRSS6Q8IU80 811 aa17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 SGSM3Q96HU1 749 aa17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 VPS39Q96JC1 886 aa17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 PLEKHG4BQ96PX9 1271 aa17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 TCF12Q99081 682 aa17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 WRAP53Q9BUR4 548 aaKnown RBP17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 ASB8Q9H765 288 aa17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 POLMQ9NP87 494 aaPredicted RBP17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 INTS10Q9NVR2 710 aaKnown RBP17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 FAM53CQ9NYF3 392 aa17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 SCML1Q9UN30 329 aa17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 ITM2BQ9Y287 266 aa17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 NCKAP1Q9Y2A7 1128 aa17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 ACTL7BQ9Y614 415 aa17.07■□□□□ 0.32
CCDC28B-202ENST00000421922 A0A1W2PP55 124 aa17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 UBA6A0AVT1 1052 aaPredicted RBP17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 RGSL1A5PLK6 1076 aa17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 C19orf67A6NJJ6 358 aa17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 GOLGA8CPA6NN73 597 aa17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 STK25O00506 426 aa17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 LZTS3O60299 673 aaPredicted RBP17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 ATG13O75143 517 aa17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 FOXN2P32314 431 aa17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 SERPINB8P50452 374 aa17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 CLCN5P51795 746 aa17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 COPAP53621 1224 aa17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 PTSQ03393 145 aa17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 RALGDSQ12967 914 aa17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 ITGA9Q13797 1035 aa17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 LYPLAL1Q5VWZ2 237 aa17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 KIAA1324Q6UXG2 1013 aaKnown RBP17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 CERS6Q6ZMG9 384 aa17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 SNX20Q7Z614 316 aa17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 SIX5Q8N196 739 aa17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 GPATCH11Q8N954 259 aa17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 EID2BQ96D98 161 aa17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 SIPA1Q96FS4 1042 aa17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 ELMO2Q96JJ3 720 aa17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 NELL2Q99435 816 aa17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 CDH19Q9H159 772 aa17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 KCNK9Q9NPC2 374 aa17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 MARCH4Q9P2E8 410 aaPredicted RBP17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 CORO1CQ9ULV4 474 aaPredicted RBP17.06■□□□□ 0.32
CCDC28B-202ENST00000421922 A0A1W2PQF6 199 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms