RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 DDR2Q16832 855 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 ARL13AQ5H913 290 aaPredicted RBP14.82□□□□□ -0.04
USP4-203ENST00000415188 VWA5B1Q5TIE3 1220 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 IRGCQ6NXR0 463 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 CEP97Q8IW35 865 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 ASAH2Q9NR71 780 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 NCKIPSDQ9NZQ3 722 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 MARCH2Q9P0N8 246 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 NUDT5Q9UKK9 219 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 KANSL1LA0AUZ9 987 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 CCDC78A2IDD5 438 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 PRR23AA6NEV1 266 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 MROH6A6NGR9 719 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 MEI4A8MW99 385 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 GRID2O43424 1007 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 RAMP2O60895 175 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 EPOP01588 193 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 F7P08709 466 aaPredicted RBP14.82□□□□□ -0.04
USP4-203ENST00000415188 LTA4HP09960 611 aaKnown RBP14.82□□□□□ -0.04
USP4-203ENST00000415188 TFEBP19484 476 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 HLA-DPA1P20036 260 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 SAT1P21673 171 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 PPARGP37231 505 aaPredicted RBP14.82□□□□□ -0.04
USP4-203ENST00000415188 AVPR1AP37288 418 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 CD86P42081 329 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 GPR15P49685 360 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 EPHA5P54756 1037 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 NAGLUP54802 743 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 SESN3P58005 492 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 SLC25A3Q00325 362 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 PFKPQ01813 784 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 MSLNQ13421 630 aaPredicted RBP14.82□□□□□ -0.04
USP4-203ENST00000415188 UBXN2BQ14CS0 331 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 TEAD2Q15562 447 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 C5orf22Q49AR2 442 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 C16orf89Q6UX73 402 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 MFSD6LQ8IWD5 586 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.82□□□□□ -0.04
USP4-203ENST00000415188 POU5F2Q8N7G0 328 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 GPATCH11Q8N954 259 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 RP9Q8TA86 221 aaKnown RBP14.82□□□□□ -0.04
USP4-203ENST00000415188 SHKBP1Q8TBC3 707 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 MAPK15Q8TD08 544 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 ELSPBP1Q96BH3 223 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 NXNL1Q96CM4 212 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 SHDQ96IW2 340 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 FEM1CQ96JP0 617 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 ASB16Q96NS5 453 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 SERPINI1Q99574 410 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 OMDQ99983 421 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 LRRC3Q9BY71 257 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 VCX3BQ9H321 246 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 ZNF385DQ9H6B1 395 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 IGSF5Q9NSI5 407 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 CHD5Q8TDI0 1954 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 LOC285095A0A1B0GVY8 99 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 RGSL1A5PLK6 1076 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 E9PBE3 544 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 ZBTB14O43829 449 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 KLHL41O60662 606 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 PENKP01210 267 aaPredicted RBP14.81□□□□□ -0.04
USP4-203ENST00000415188 FGF1P05230 155 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 CHRNGP07510 517 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 MMP2P08253 660 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 ZDHHC11BP0C7U3 371 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 HAPLN1P10915 354 aaPredicted RBP14.81□□□□□ -0.04
USP4-203ENST00000415188 PIK3R1P27986 724 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 VIPR2P41587 438 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 CHRNA4P43681 627 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 USP46P62068 366 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 PRKCQQ04759 706 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 ACVR1Q04771 509 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 NSUN2Q08J23 767 aaKnown RBP eCLIP14.81□□□□□ -0.04
USP4-203ENST00000415188 GALNT1Q10472 559 aaPredicted RBP14.81□□□□□ -0.04
USP4-203ENST00000415188 DLG1Q12959 904 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 SERINC3Q13530 473 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 CUL3Q13618 768 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 PCSK7Q16549 785 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 TECRLQ5HYJ1 363 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 C10orf120Q5SQS8 335 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 SDHAF4Q5VUM1 108 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 FBXL22Q6P050 247 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 TPRG1Q6ZUI0 275 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 TFAP2DQ7Z6R9 452 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 TMC8Q8IU68 726 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 SLC22A9Q8IVM8 553 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 LSMEM2Q8N112 164 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 PHTF2Q8N3S3 785 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 SLC25A41Q8N5S1 370 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 NRG4Q8WWG1 115 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 CLPTM1LQ96KA5 538 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 OR52B2Q96RD2 323 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 EML4Q9HC35 981 aaKnown RBP14.81□□□□□ -0.04
USP4-203ENST00000415188 ZFP14Q9HCL3 533 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 HEBP1Q9NRV9 189 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 VPS28Q9UK41 221 aa14.81□□□□□ -0.04
USP4-203ENST00000415188 CFAP54Q96N23 3096 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 SLC12A8A0AV02 714 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 J3KR12 359 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 PRAMEF11O60813 436 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms