RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 TBC1D3IA0A087WXS9 549 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 TBC1D3EA0A087X179 549 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 TBC1D3KA0A087X1G2 549 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 TBC1D3FA6NER0 549 aaPredicted RBP11.94□□□□□ -0.5
PTPRF-205ENST00000414879 TBC1D3LB9A6J9 549 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 ENPP3O14638 875 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 NPHS1O60500 1241 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 CNOT3O75175 753 aaKnown RBP11.94□□□□□ -0.5
PTPRF-205ENST00000414879 RASSF9O75901 435 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 TBC1D3HP0C7X1 549 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 COX4I1P13073 169 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 ATP6V1B2P21281 511 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 DRD4P21917 467 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 JAK1P23458 1154 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 CLK1P49759 484 aaKnown RBP11.94□□□□□ -0.5
PTPRF-205ENST00000414879 TBC1D3GQ6DHY5 549 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 TBC1D3CQ6IPX1 549 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 TRIM40Q6P9F5 258 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 RFWD3Q6PCD5 774 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 COLGALT2Q8IYK4 626 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 TBC1D3Q8IZP1 549 aaPredicted RBP11.94□□□□□ -0.5
PTPRF-205ENST00000414879 ATG16L2Q8NAA4 619 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 DNAJB8Q8NHS0 232 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 PEX13Q92968 403 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 SPACA7Q96KW9 195 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 RAD9AQ99638 391 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 ZCWPW1Q9H0M4 648 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 CAAP1Q9H8G2 361 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 TLR9Q9NR96 1032 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 ANAPC2Q9UJX6 822 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 CNTN6Q9UQ52 1028 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 TRIM38O00635 465 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 SPTLC1O15269 473 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 STK16O75716 305 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 EPHX1P07099 455 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 SPATA31D3P0C874 917 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 ZNF30P17039 623 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 PRDX6P30041 224 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 SLC26A3P40879 764 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 C21orf59P57076 290 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 C1DQ13901 141 aaKnown RBP11.94□□□□□ -0.5
PTPRF-205ENST00000414879 C15orf39Q6ZRI6 1047 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 ZNF621Q6ZSS3 439 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 SPATA31D4Q6ZUB0 917 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 RTL10Q7L3V2 364 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 OR7D4Q8NG98 312 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 SHISA4Q96DD7 197 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 CDRT15Q96T59 188 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 FANCEQ9HB96 536 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 VPS4AQ9UN37 437 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 SLC12A4Q9UP95 1085 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 KLHL20Q9Y2M5 609 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 MYH14Q7Z406 1995 aaKnown RBP11.94□□□□□ -0.5
PTPRF-205ENST00000414879 MBLAC1A4D2B0 266 aaPredicted RBP11.94□□□□□ -0.5
PTPRF-205ENST00000414879 MEI4A8MW99 385 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 BLKP51451 505 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 SERINC3Q13530 473 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 MRPL10Q7Z7H8 261 aaKnown RBP11.94□□□□□ -0.5
PTPRF-205ENST00000414879 IGSF21Q96ID5 467 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 STRA6Q9BX79 667 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 DNAAF2Q9NVR5 837 aaKnown RBP11.94□□□□□ -0.5
PTPRF-205ENST00000414879 BUD23O43709 281 aaKnown RBP11.93□□□□□ -0.5
PTPRF-205ENST00000414879 WDR47O94967 919 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 PRAMEF1O95521 474 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 CLK3P49761 638 aaKnown RBP11.93□□□□□ -0.5
PTPRF-205ENST00000414879 GALNT2Q10471 571 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 UPP1Q16831 310 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 AAGABQ6PD74 315 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 SH3RF2Q8TEC5 729 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 PSMG2Q969U7 264 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 MRM3Q9HC36 420 aaKnown RBP11.93□□□□□ -0.5
PTPRF-205ENST00000414879 SNX8Q9Y5X2 465 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 MTMR11A4FU01 709 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 A8MX80 341 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 GPR32O75388 356 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 RB1P06400 928 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 PROZP22891 400 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 FSHRP23945 695 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 SNX20Q7Z614 316 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 PROSER1Q86XN7 944 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 B4GALNT2Q8NHY0 566 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 SPPL2AQ8TCT8 520 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 ROGDIQ9GZN7 287 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 MAST2Q6P0Q8 1798 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 INPP4BO15327 924 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 TPST1O60507 370 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 CST5P28325 142 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-205ENST00000414879 NDUFS1P28331 727 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 UBE3AQ05086 875 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 TNK2Q07912 1038 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 TMEM154Q6P9G4 183 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 SLC44A2Q8IWA5 706 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-205ENST00000414879 SAMD14Q8IZD0 417 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-205ENST00000414879 OR52K2Q8NGK3 314 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 FIG4Q92562 907 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 XYLT2Q9H1B5 865 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 CHRAC1Q9NRG0 131 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 TMEM248Q9NWD8 314 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 LIMD1Q9UGP4 676 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 PCDHGB3Q9Y5G1 929 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms