RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.95□□□□□ -0.34
PTPRN-202ENST00000409251 NCKIPSDQ9NZQ3 722 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 PCDHGA7Q9Y5G6 932 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 LOC285556D6RIA3 1793 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 ACOT8O14734 319 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 IL1BP01584 269 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 HOXD11P31277 338 aaPredicted RBP12.95□□□□□ -0.34
PTPRN-202ENST00000409251 IDUAP35475 653 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 ALDH3B2P48448 385 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 MLLT10P55197 1068 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 BST2Q10589 180 aaKnown RBP12.95□□□□□ -0.34
PTPRN-202ENST00000409251 LAPTM4AQ15012 233 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 TAF2Q6P1X5 1199 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 CNSTQ6PJW8 725 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 POC5Q8NA72 575 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 FNIP1Q8TF40 1166 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 MCRS1Q96EZ8 462 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 ZNF597Q96LX8 424 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 BIRC8Q96P09 236 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 RBBP8Q99708 897 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 C1orf50Q9BV19 199 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 LRRC40Q9H9A6 602 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 PNPLA8Q9NP80 782 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 HAS3O00219 553 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 PIRO00625 290 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 ITGB6P18564 788 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 SAMD4BQ5PRF9 694 aaKnown RBP12.95□□□□□ -0.34
PTPRN-202ENST00000409251 ZNF567Q8N184 647 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 DEPDC4Q8N2C3 294 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 OR2T34Q8NGX1 318 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 OR2T3Q8NH03 318 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 FRMD8P1Q9BZ68 369 aaPredicted RBP12.95□□□□□ -0.34
PTPRN-202ENST00000409251 RNF38Q9H0F5 515 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 TOR3AQ9H497 397 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 ALG2Q9H553 416 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 PLEKHA5Q9HAU0 1116 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 DDIT4Q9NX09 232 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 UTP6Q9NYH9 597 aaKnown RBP12.95□□□□□ -0.34
PTPRN-202ENST00000409251 KLQ9UEF7 1012 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 BAG5Q9UL15 447 aa12.95□□□□□ -0.34
PTPRN-202ENST00000409251 MSI1O43347 362 aaKnown RBP12.94□□□□□ -0.34
PTPRN-202ENST00000409251 PRKCGP05129 697 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 C1QTNF8P60827 252 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 DPYSQ14117 519 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 ZBTB6Q15916 424 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 GRTP1Q5TC63 336 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 ZNF470Q6ECI4 717 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 NIPAL1Q6NVV3 410 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 HS3ST5Q8IZT8 346 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 NIPA2Q8N8Q9 360 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 SPATA22Q8NHS9 363 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 ACMSDQ8TDX5 336 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 SLCO4A1Q96BD0 722 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 TNIP3Q96KP6 325 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 UNC93B1Q9H1C4 597 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 TPK1Q9H3S4 243 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 OXSMQ9NWU1 459 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 DFFAO00273 331 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 TBX1O43435 398 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 B4GALT3O60512 393 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 CHEK2O96017 543 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 GPR15P49685 360 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 APLP1P51693 650 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 YWHAHQ04917 246 aaPredicted RBP12.94□□□□□ -0.34
PTPRN-202ENST00000409251 INCA1Q0VD86 236 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 NFYCQ13952 458 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 C6orf10Q5SRN2 563 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 CMTR2Q8IYT2 770 aaKnown RBP12.94□□□□□ -0.34
PTPRN-202ENST00000409251 AFAP1L2Q8N4X5 818 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 ANKRD52Q8NB46 1076 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 FBXO30Q8TB52 745 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 STARD8Q92502 1023 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 PPP1R14BQ96C90 147 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 KCTD15Q96SI1 283 aaPredicted RBP12.94□□□□□ -0.34
PTPRN-202ENST00000409251 STARD7Q9NQZ5 370 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 TMLHEQ9NVH6 421 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 DUS2Q9NX74 493 aaKnown RBP12.94□□□□□ -0.34
PTPRN-202ENST00000409251 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.94□□□□□ -0.34
PTPRN-202ENST00000409251 BOLA1Q9Y3E2 137 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 ZSWIM8A7E2V4 1837 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 MDM4O15151 490 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 ATP5BP06576 529 aaKnown RBP12.94□□□□□ -0.34
PTPRN-202ENST00000409251 STMN1P16949 149 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 SLC7A1P30825 629 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 POLR2IP36954 125 aaKnown RBP12.94□□□□□ -0.34
PTPRN-202ENST00000409251 HPCAL1P37235 193 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 GRIK1P39086 918 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 VBP1P61758 197 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 YBX1P67809 324 aaKnown RBP12.94□□□□□ -0.34
PTPRN-202ENST00000409251 DDR2Q16832 855 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 PAGE2Q7Z2X7 111 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 ZFP90Q8TF47 636 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 CLIP3Q96DZ5 547 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 LHPPQ9H008 270 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 GIMAP4Q9NUV9 329 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.94□□□□□ -0.34
PTPRN-202ENST00000409251 MAP1BP46821 2468 aaKnown RBP12.94□□□□□ -0.34
PTPRN-202ENST00000409251 NUP205Q92621 2012 aa12.94□□□□□ -0.34
PTPRN-202ENST00000409251 A0A1W2PQ67 120 aa12.93□□□□□ -0.34
PTPRN-202ENST00000409251 FAM72CH0Y354 149 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms