RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 HOMER3Q9NSC5 361 aa21.64■■□□□ 1.06
CLN3-207ENST00000395653 NFKBIL1Q9UBC1 381 aaPredicted RBP21.64■■□□□ 1.06
CLN3-207ENST00000395653 KLQ9UEF7 1012 aa21.64■■□□□ 1.06
CLN3-207ENST00000395653 APOBEC3BQ9UH17 382 aaKnown RBP21.64■■□□□ 1.06
CLN3-207ENST00000395653 DRG1Q9Y295 367 aaKnown RBP21.64■■□□□ 1.06
CLN3-207ENST00000395653 TMEM202A6NGA9 273 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 TNFRSF10CO14798 259 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 KCNA4P22459 653 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 HMGCLP35914 325 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 DCDC1P59894 354 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 CDK3Q00526 305 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 ALG11Q2TAA5 492 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 HENMT1Q5T8I9 393 aaKnown RBP21.63■■□□□ 1.05
CLN3-207ENST00000395653 KCTD11Q693B1 232 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 ZNF548Q8NEK5 533 aaPredicted RBP21.63■■□□□ 1.05
CLN3-207ENST00000395653 OR56A4Q8NGH8 313 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 WDR24Q96S15 920 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 OSBPL9Q96SU4 736 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 SLC13A1Q9BZW2 595 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 FAM83DQ9H4H8 585 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 UCKL1Q9NWZ5 548 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 SPASTQ9UBP0 616 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP21.63■■□□□ 1.05
CLN3-207ENST00000395653 CSNK1G3Q9Y6M4 447 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 COL5A1P20908 1838 aaPredicted RBP21.63■■□□□ 1.05
CLN3-207ENST00000395653 NEMP2A6NFY4 417 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 AURKAO14965 403 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 RASGRP1O95267 797 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 IFNB1P01574 187 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 ACTN2P35609 894 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 HK3P52790 923 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 SRP54P61011 504 aaKnown RBP21.63■■□□□ 1.05
CLN3-207ENST00000395653 FAXCQ5TGI0 409 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 RBFAQ8N0V3 343 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 EID2Q8N6I1 236 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 NAP1L3Q99457 506 aaPredicted RBP21.63■■□□□ 1.05
CLN3-207ENST00000395653 AGAP2Q99490 1192 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 CAAP1Q9H8G2 361 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 FGF22Q9HCT0 170 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 SNX12Q9UMY4 172 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 DGKBQ9Y6T7 804 aa21.63■■□□□ 1.05
CLN3-207ENST00000395653 CES2O00748 559 aa21.62■■□□□ 1.05
CLN3-207ENST00000395653 SCAMP1O15126 338 aa21.62■■□□□ 1.05
CLN3-207ENST00000395653 AQP9O43315 295 aa21.62■■□□□ 1.05
CLN3-207ENST00000395653 HID1Q8IV36 788 aa21.62■■□□□ 1.05
CLN3-207ENST00000395653 TTC30BQ8N4P2 665 aa21.62■■□□□ 1.05
CLN3-207ENST00000395653 PRELID2Q8N945 189 aa21.62■■□□□ 1.05
CLN3-207ENST00000395653 CCDC89Q8N998 374 aa21.62■■□□□ 1.05
CLN3-207ENST00000395653 OR4C6Q8NH72 309 aa21.62■■□□□ 1.05
CLN3-207ENST00000395653 BLOC1S5Q8TDH9 187 aa21.62■■□□□ 1.05
CLN3-207ENST00000395653 TSACCQ96A04 125 aaPredicted RBP21.62■■□□□ 1.05
CLN3-207ENST00000395653 PDXPQ96GD0 296 aa21.62■■□□□ 1.05
CLN3-207ENST00000395653 TBL1YQ9BQ87 522 aa21.62■■□□□ 1.05
CLN3-207ENST00000395653 LRRC61Q9BV99 259 aa21.62■■□□□ 1.05
CLN3-207ENST00000395653 TCEAL2Q9H3H9 227 aaPredicted RBP21.62■■□□□ 1.05
CLN3-207ENST00000395653 LRRC40Q9H9A6 602 aa21.62■■□□□ 1.05
CLN3-207ENST00000395653 ARNT2Q9HBZ2 717 aa21.62■■□□□ 1.05
CLN3-207ENST00000395653 FTSJ1Q9UET6 329 aa21.62■■□□□ 1.05
CLN3-207ENST00000395653 FEZ2Q9UHY8 353 aaPredicted RBP21.62■■□□□ 1.05
CLN3-207ENST00000395653 SPAARA0A1B0GVQ0 90 aa21.61■■□□□ 1.05
CLN3-207ENST00000395653 PCNX2A6NKB5 2137 aa21.61■■□□□ 1.05
CLN3-207ENST00000395653 PSMD3O43242 534 aa21.61■■□□□ 1.05
CLN3-207ENST00000395653 SLC4A1P02730 911 aa21.61■■□□□ 1.05
CLN3-207ENST00000395653 GIMD1P0DJR0 217 aa21.61■■□□□ 1.05
CLN3-207ENST00000395653 FDFT1P37268 417 aa21.61■■□□□ 1.05
CLN3-207ENST00000395653 GNG11P61952 73 aa21.61■■□□□ 1.05
CLN3-207ENST00000395653 SIM1P81133 766 aaPredicted RBP21.61■■□□□ 1.05
CLN3-207ENST00000395653 GLT6D1Q7Z4J2 308 aa21.61■■□□□ 1.05
CLN3-207ENST00000395653 GPR26Q8NDV2 337 aa21.61■■□□□ 1.05
CLN3-207ENST00000395653 LMX1AQ8TE12 382 aa21.61■■□□□ 1.05
CLN3-207ENST00000395653 OR1E3Q8WZA6 343 aa21.61■■□□□ 1.05
CLN3-207ENST00000395653 APOL2Q9BQE5 337 aa21.61■■□□□ 1.05
CLN3-207ENST00000395653 ZSCAN5AQ9BUG6 496 aa21.61■■□□□ 1.05
CLN3-207ENST00000395653 FRMD8Q9BZ67 464 aaPredicted RBP21.61■■□□□ 1.05
CLN3-207ENST00000395653 KCND1Q9NSA2 647 aa21.61■■□□□ 1.05
CLN3-207ENST00000395653 NLGN3Q9NZ94 848 aa21.61■■□□□ 1.05
CLN3-207ENST00000395653 PAK5Q9P286 719 aa21.61■■□□□ 1.05
CLN3-207ENST00000395653 LRP4O75096 1905 aa21.6■■□□□ 1.05
CLN3-207ENST00000395653 ERI2A8K979 691 aaKnown RBP21.6■■□□□ 1.05
CLN3-207ENST00000395653 PGRMC1O00264 195 aaKnown RBP21.6■■□□□ 1.05
CLN3-207ENST00000395653 TNFSF14O43557 240 aa21.6■■□□□ 1.05
CLN3-207ENST00000395653 USP12O75317 370 aa21.6■■□□□ 1.05
CLN3-207ENST00000395653 AP2A1O95782 977 aa21.6■■□□□ 1.05
CLN3-207ENST00000395653 TNFP01375 233 aa21.6■■□□□ 1.05
CLN3-207ENST00000395653 ALPPL2P10696 532 aa21.6■■□□□ 1.05
CLN3-207ENST00000395653 OLIG2Q13516 323 aa21.6■■□□□ 1.05
CLN3-207ENST00000395653 SPARCL1Q14515 664 aa21.6■■□□□ 1.05
CLN3-207ENST00000395653 HS1BP3Q53T59 392 aa21.6■■□□□ 1.05
CLN3-207ENST00000395653 PRRT3Q5FWE3 981 aa21.6■■□□□ 1.05
CLN3-207ENST00000395653 ZDHHC20Q5W0Z9 365 aa21.6■■□□□ 1.05
CLN3-207ENST00000395653 PDPK2PQ6A1A2 396 aa21.6■■□□□ 1.05
CLN3-207ENST00000395653 DENND5AQ6IQ26 1287 aa21.6■■□□□ 1.05
CLN3-207ENST00000395653 NYAP1Q6ZVC0 841 aa21.6■■□□□ 1.05
CLN3-207ENST00000395653 FSTL5Q8N475 847 aaPredicted RBP21.6■■□□□ 1.05
CLN3-207ENST00000395653 ACTRT1Q8TDG2 376 aa21.6■■□□□ 1.05
CLN3-207ENST00000395653 COG1Q8WTW3 980 aa21.6■■□□□ 1.05
CLN3-207ENST00000395653 COX14Q96I36 57 aa21.6■■□□□ 1.05
CLN3-207ENST00000395653 MS4A14Q96JA4 679 aa21.6■■□□□ 1.05
CLN3-207ENST00000395653 HIC2Q96JB3 615 aa21.6■■□□□ 1.05
CLN3-207ENST00000395653 PLEKHG4BQ96PX9 1271 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms