RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 TAS2R1Q9NYW7 299 aa13.4□□□□□ -0.26
USP49-203ENST00000394253 CHD2O14647 1828 aaKnown RBP13.4□□□□□ -0.26
USP49-203ENST00000394253 CHADO15335 359 aa13.4□□□□□ -0.26
USP49-203ENST00000394253 ITGAVP06756 1048 aa13.4□□□□□ -0.26
USP49-203ENST00000394253 RAB4AP20338 218 aa13.4□□□□□ -0.26
USP49-203ENST00000394253 LARS2Q15031 903 aaKnown RBP13.4□□□□□ -0.26
USP49-203ENST00000394253 TOP1MTQ969P6 601 aa13.4□□□□□ -0.26
USP49-203ENST00000394253 PPP1R16AQ96I34 528 aa13.4□□□□□ -0.26
USP49-203ENST00000394253 MROH8Q9H579 483 aa13.4□□□□□ -0.26
USP49-203ENST00000394253 CDHR5Q9HBB8 845 aa13.4□□□□□ -0.26
USP49-203ENST00000394253 KLQ9UEF7 1012 aa13.4□□□□□ -0.26
USP49-203ENST00000394253 KIF13AQ9H1H9 1805 aa13.4□□□□□ -0.26
USP49-203ENST00000394253 TEX13CA0A0J9YWL9 993 aa13.4□□□□□ -0.27
USP49-203ENST00000394253 GNRH1P01148 92 aa13.4□□□□□ -0.27
USP49-203ENST00000394253 RPS9P46781 194 aaKnown RBP13.4□□□□□ -0.27
USP49-203ENST00000394253 ZNF267Q14586 743 aaPredicted RBP13.4□□□□□ -0.27
USP49-203ENST00000394253 MPPE1Q53F39 396 aa13.4□□□□□ -0.27
USP49-203ENST00000394253 IQSEC1Q6DN90 963 aa13.4□□□□□ -0.27
USP49-203ENST00000394253 BORAQ6PGQ7 559 aa13.4□□□□□ -0.27
USP49-203ENST00000394253 TBCBQ99426 244 aa13.4□□□□□ -0.27
USP49-203ENST00000394253 TUBG2Q9NRH3 451 aa13.4□□□□□ -0.27
USP49-203ENST00000394253 PCDHGB6Q9Y5F9 930 aa13.4□□□□□ -0.27
USP49-203ENST00000394253 KDM5CP41229 1560 aa13.4□□□□□ -0.27
USP49-203ENST00000394253 SHANK2Q9UPX8 1470 aa13.4□□□□□ -0.27
USP49-203ENST00000394253 CDC42BPAQ5VT25 1732 aa13.4□□□□□ -0.27
USP49-203ENST00000394253 TULP3O75386 442 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 OR1E1P30953 314 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 PRKAG1P54619 331 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 FSCN1Q16658 493 aaKnown RBP13.39□□□□□ -0.27
USP49-203ENST00000394253 RAD9BQ6WBX8 426 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 TMEM169Q96HH4 297 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 RABL2BQ9UNT1 228 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 CKAP5Q14008 2032 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 LAMC3Q9Y6N6 1575 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 HK1P19367 917 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 PI16Q6UXB8 463 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 ADAMTSL2Q86TH1 951 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 SEC14L1Q92503 715 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 ZNF175Q9Y473 711 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 MAGP20916 626 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 TNFRSF8P28908 595 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 PARP6Q2NL67 630 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 XRRA1Q6P2D8 792 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 KLHL35Q6PF15 583 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 C7orf61Q8IZ16 206 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 SVOPLQ8N434 492 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 HTR3CQ8WXA8 447 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 NXF3Q9H4D5 531 aaKnown RBP13.39□□□□□ -0.27
USP49-203ENST00000394253 PLEKHA6Q9Y2H5 1048 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 OR6C6A6NF89 314 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 FMR1Q06787 632 aaKnown RBP eCLIP13.39□□□□□ -0.27
USP49-203ENST00000394253 GIT2Q14161 759 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 ACTL9Q8TC94 416 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 MTFMTQ96DP5 389 aaKnown RBP13.39□□□□□ -0.27
USP49-203ENST00000394253 TCF7L1Q9HCS4 588 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 PTPRHQ9HD43 1115 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 ADGRE2Q9UHX3 823 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 FBXO10Q9UK96 956 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 ERVV-1B6SEH8 477 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 SLC22A3O75751 556 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 APBA3O96018 575 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 PDYNP01213 254 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 BLMHQ13867 455 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 PLEKHN1Q494U1 663 aaPredicted RBP13.39□□□□□ -0.27
USP49-203ENST00000394253 BRMS1LQ5PSV4 323 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 PTF1AQ7RTS3 328 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 KXD1Q9BQD3 176 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 ZFP14Q9HCL3 533 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 DNAAF2Q9NVR5 837 aaKnown RBP13.39□□□□□ -0.27
USP49-203ENST00000394253 CATP04040 527 aaKnown RBP13.39□□□□□ -0.27
USP49-203ENST00000394253 SLC1A2P43004 574 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 SRSF11Q05519 484 aaKnown RBP13.39□□□□□ -0.27
USP49-203ENST00000394253 SP140Q13342 867 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 CARTPTQ16568 116 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 GPRIN3Q6ZVF9 776 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 MRPS33Q9Y291 106 aaKnown RBP13.39□□□□□ -0.27
USP49-203ENST00000394253 DISC1C4P0D8 188 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 JCHAINP01591 159 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 LTA4HP09960 611 aaKnown RBP13.39□□□□□ -0.27
USP49-203ENST00000394253 MAN2A2P49641 1150 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 MAPK14Q16539 360 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 WSCD2Q2TBF2 565 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 HSDL2Q6YN16 418 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 TPGS1Q6ZTW0 290 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 OR2T34Q8NGX1 318 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 OR2T3Q8NH03 318 aa13.39□□□□□ -0.27
USP49-203ENST00000394253 TSNAXQ99598 290 aaKnown RBP13.39□□□□□ -0.27
USP49-203ENST00000394253 RBM22Q9NW64 420 aaKnown RBP eCLIP13.39□□□□□ -0.27
USP49-203ENST00000394253 ENTPD5O75356 428 aa13.38□□□□□ -0.27
USP49-203ENST00000394253 IGSF6O95976 241 aa13.38□□□□□ -0.27
USP49-203ENST00000394253 COL28A1Q2UY09 1125 aa13.38□□□□□ -0.27
USP49-203ENST00000394253 FBXO43Q4G163 708 aa13.38□□□□□ -0.27
USP49-203ENST00000394253 ADGRF2Q8IZF7 708 aa13.38□□□□□ -0.27
USP49-203ENST00000394253 SCGB1C1Q8TD33 95 aa13.38□□□□□ -0.27
USP49-203ENST00000394253 OXER1Q8TDS5 423 aa13.38□□□□□ -0.27
USP49-203ENST00000394253 TREX2Q9BQ50 279 aaPredicted RBP13.38□□□□□ -0.27
USP49-203ENST00000394253 ZNF225Q9UK10 706 aa13.38□□□□□ -0.27
USP49-203ENST00000394253 PP2D1A8MPX8 630 aa13.38□□□□□ -0.27
USP49-203ENST00000394253 PDPK1O15530 556 aa13.38□□□□□ -0.27
USP49-203ENST00000394253 TDP2O95551 362 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms