RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 TUBGCP5Q96RT8 1024 aa25.13■■□□□ 1.61
SHOX2-201ENST00000389589 CCDC106Q9BWC9 280 aa25.13■■□□□ 1.61
SHOX2-201ENST00000389589 CEP44Q9C0F1 390 aa25.13■■□□□ 1.61
SHOX2-201ENST00000389589 TNKS2Q9H2K2 1166 aa25.13■■□□□ 1.61
SHOX2-201ENST00000389589 COMMD10Q9Y6G5 202 aa25.13■■□□□ 1.61
SHOX2-201ENST00000389589 NUP210Q8TEM1 1887 aaPredicted RBP25.13■■□□□ 1.61
SHOX2-201ENST00000389589 MYOGP15173 224 aa25.13■■□□□ 1.61
SHOX2-201ENST00000389589 CD1DP15813 335 aa25.13■■□□□ 1.61
SHOX2-201ENST00000389589 CD9P21926 228 aa25.13■■□□□ 1.61
SHOX2-201ENST00000389589 FMO4P31512 558 aa25.13■■□□□ 1.61
SHOX2-201ENST00000389589 NTHL1P78549 312 aa25.13■■□□□ 1.61
SHOX2-201ENST00000389589 CACNG1Q06432 222 aa25.13■■□□□ 1.61
SHOX2-201ENST00000389589 PSAPL1Q6NUJ1 521 aa25.13■■□□□ 1.61
SHOX2-201ENST00000389589 PARP9Q8IXQ6 854 aa25.13■■□□□ 1.61
SHOX2-201ENST00000389589 CCNYL1Q8N7R7 359 aa25.13■■□□□ 1.61
SHOX2-201ENST00000389589 STON2Q8WXE9 905 aa25.13■■□□□ 1.61
SHOX2-201ENST00000389589 RPL10LQ96L21 214 aaKnown RBP25.13■■□□□ 1.61
SHOX2-201ENST00000389589 A8MT66 165 aa25.12■■□□□ 1.61
SHOX2-201ENST00000389589 MATN2O00339 956 aa25.12■■□□□ 1.61
SHOX2-201ENST00000389589 DIAPH2O60879 1101 aa25.12■■□□□ 1.61
SHOX2-201ENST00000389589 PABPC1P11940 636 aaKnown RBP25.12■■□□□ 1.61
SHOX2-201ENST00000389589 MPSTP25325 297 aa25.12■■□□□ 1.61
SHOX2-201ENST00000389589 CTSOP43234 321 aaPredicted RBP25.12■■□□□ 1.61
SHOX2-201ENST00000389589 C22orf39Q6P5X5 142 aa25.12■■□□□ 1.61
SHOX2-201ENST00000389589 PIANPQ8IYJ0 282 aa25.12■■□□□ 1.61
SHOX2-201ENST00000389589 STK40Q8N2I9 435 aa25.12■■□□□ 1.61
SHOX2-201ENST00000389589 TBRG4Q969Z0 631 aaKnown RBP eCLIP25.12■■□□□ 1.61
SHOX2-201ENST00000389589 ALG9Q9H6U8 611 aa25.12■■□□□ 1.61
SHOX2-201ENST00000389589 TLE6Q9H808 572 aa25.12■■□□□ 1.61
SHOX2-201ENST00000389589 SLC9A3R1O14745 358 aaPredicted RBP25.11■■□□□ 1.61
SHOX2-201ENST00000389589 HDAC3O15379 428 aa25.11■■□□□ 1.61
SHOX2-201ENST00000389589 PYGLP06737 847 aa25.11■■□□□ 1.61
SHOX2-201ENST00000389589 ALPIP09923 528 aa25.11■■□□□ 1.61
SHOX2-201ENST00000389589 XIAPP98170 497 aa25.11■■□□□ 1.61
SHOX2-201ENST00000389589 RIPK1Q13546 671 aa25.11■■□□□ 1.61
SHOX2-201ENST00000389589 PTPRRQ15256 657 aa25.11■■□□□ 1.61
SHOX2-201ENST00000389589 LSMEM2Q8N112 164 aa25.11■■□□□ 1.61
SHOX2-201ENST00000389589 PCDH20Q8N6Y1 951 aaKnown RBP25.11■■□□□ 1.61
SHOX2-201ENST00000389589 RHEBL1Q8TAI7 183 aa25.11■■□□□ 1.61
SHOX2-201ENST00000389589 BTBD10Q9BSF8 475 aa25.11■■□□□ 1.61
SHOX2-201ENST00000389589 TBC1D10AQ9BXI6 508 aa25.11■■□□□ 1.61
SHOX2-201ENST00000389589 ZFYVE1Q9HBF4 777 aa25.11■■□□□ 1.61
SHOX2-201ENST00000389589 SLC30A1Q9Y6M5 507 aa25.11■■□□□ 1.61
SHOX2-201ENST00000389589 PKMP14618 531 aaKnown RBP25.11■■□□□ 1.61
SHOX2-201ENST00000389589 TYRP14679 529 aa25.11■■□□□ 1.61
SHOX2-201ENST00000389589 PTGER3P43115 390 aa25.11■■□□□ 1.61
SHOX2-201ENST00000389589 STK19P49842 368 aaPredicted RBP25.11■■□□□ 1.61
SHOX2-201ENST00000389589 CDKN1CP49918 316 aaPredicted RBP25.11■■□□□ 1.61
SHOX2-201ENST00000389589 ADARP55265 1226 aaKnown RBP25.11■■□□□ 1.61
SHOX2-201ENST00000389589 PTPRNQ16849 979 aa25.11■■□□□ 1.61
SHOX2-201ENST00000389589 MYLK3Q32MK0 819 aa25.11■■□□□ 1.61
SHOX2-201ENST00000389589 SEL1L3Q68CR1 1132 aa25.11■■□□□ 1.61
SHOX2-201ENST00000389589 ASTLQ6HA08 431 aaPredicted RBP25.11■■□□□ 1.61
SHOX2-201ENST00000389589 MARK1Q9P0L2 795 aa25.11■■□□□ 1.61
SHOX2-201ENST00000389589 STK38LQ9Y2H1 464 aa25.11■■□□□ 1.61
SHOX2-201ENST00000389589 CAPN8A6NHC0 703 aa25.1■■□□□ 1.61
SHOX2-201ENST00000389589 HNRNPH1P31943 449 aaKnown RBP25.1■■□□□ 1.61
SHOX2-201ENST00000389589 ZNF697Q5TEC3 545 aa25.1■■□□□ 1.61
SHOX2-201ENST00000389589 METTL21CQ5VZV1 264 aa25.1■■□□□ 1.61
SHOX2-201ENST00000389589 CERS6Q6ZMG9 384 aa25.1■■□□□ 1.61
SHOX2-201ENST00000389589 ZNF707Q96C28 371 aaPredicted RBP25.1■■□□□ 1.61
SHOX2-201ENST00000389589 BIRC8Q96P09 236 aa25.1■■□□□ 1.61
SHOX2-201ENST00000389589 CPEB1Q9BZB8 566 aaKnown RBP25.1■■□□□ 1.61
SHOX2-201ENST00000389589 LINC00597Q9H2U6 94 aa25.1■■□□□ 1.61
SHOX2-201ENST00000389589 TFB2MQ9H5Q4 396 aaKnown RBP25.1■■□□□ 1.61
SHOX2-201ENST00000389589 EML4Q9HC35 981 aaKnown RBP25.1■■□□□ 1.61
SHOX2-201ENST00000389589 TAGLN3Q9UI15 199 aa25.1■■□□□ 1.61
SHOX2-201ENST00000389589 HCFC2Q9Y5Z7 792 aa25.1■■□□□ 1.61
SHOX2-201ENST00000389589 LAMA2P24043 3122 aaKnown RBP25.1■■□□□ 1.61
SHOX2-201ENST00000389589 NEMP2A6NFY4 417 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 PER2O15055 1255 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 ZBTB14O43829 449 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 SMIM24O75264 130 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 VPS26AO75436 327 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 AOC1P19801 751 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 PPARGP37231 505 aaPredicted RBP25.09■■□□□ 1.61
SHOX2-201ENST00000389589 NFKB2Q00653 900 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 ECT2LQ008S8 904 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 GPM6BQ13491 265 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 VWA5B1Q5TIE3 1220 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 TREML1Q86YW5 311 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 EID2BQ96D98 161 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 MOCOSQ96EN8 888 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 ZSWIM3Q96MP5 696 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 SLC2A11Q9BYW1 496 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 ZDHHC2Q9UIJ5 367 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 MRPS23Q9Y3D9 190 aaKnown RBP25.09■■□□□ 1.61
SHOX2-201ENST00000389589 OAS3Q9Y6K5 1087 aaKnown RBP25.09■■□□□ 1.61
SHOX2-201ENST00000389589 C1orf232A0A0U1RR37 186 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 CA3P07451 260 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 GKP32189 559 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 ATP6V0D1P61421 351 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 RAD51Q06609 339 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 LY6G5CQ5SRR4 150 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 TAS2R42Q7RTR8 314 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 HTATIP2Q9BUP3 242 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 DERL2Q9GZP9 239 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 MED16Q9Y2X0 877 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 PDE4DIPQ5VU43 2346 aa25.09■■□□□ 1.61
SHOX2-201ENST00000389589 ESR1P03372 595 aa25.08■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms