RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 ZNF512Q96ME7 567 aaPredicted RBP13.35□□□□□ -0.27
CCDC3-202ENST00000378839 PKP2Q99959 881 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 MAGEH1Q9H213 219 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 EML4Q9HC35 981 aaKnown RBP13.35□□□□□ -0.27
CCDC3-202ENST00000378839 PSMD13Q9UNM6 376 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 ASB1Q9Y576 335 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 AK5Q9Y6K8 562 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 PSMD12O00232 456 aaPredicted RBP13.34□□□□□ -0.27
CCDC3-202ENST00000378839 CDC7O00311 574 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 SNAP91O60641 907 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 BCAS2O75934 225 aaPredicted RBP13.34□□□□□ -0.27
CCDC3-202ENST00000378839 IRF1P10914 325 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 VCLP18206 1134 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 CORO1AP31146 461 aaKnown RBP13.34□□□□□ -0.27
CCDC3-202ENST00000378839 SLC26A3P40879 764 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 ARF5P84085 180 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 ZXDBP98169 803 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 GK3PQ14409 553 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 PSAPL1Q6NUJ1 521 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 ISLR2Q6UXK2 745 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 ANKS3Q6ZW76 656 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 RETREG3Q86VR2 466 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 SLC22A9Q8IVM8 553 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 PPP2R3CQ969Q6 453 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 CLSTN3Q9BQT9 956 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 TDRD1Q9BXT4 1180 aaKnown RBP13.34□□□□□ -0.27
CCDC3-202ENST00000378839 COPS7BQ9H9Q2 264 aaPredicted RBP13.34□□□□□ -0.27
CCDC3-202ENST00000378839 BPIFA1Q9NP55 256 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 PRORSD1PA6NEY8 169 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 DNAJA2O60884 412 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 ME2P23368 584 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 PRDX3P30048 256 aaKnown RBP13.34□□□□□ -0.27
CCDC3-202ENST00000378839 CA5AP35218 305 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 GRIA2P42262 883 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 BTG3Q14201 252 aaPredicted RBP13.34□□□□□ -0.27
CCDC3-202ENST00000378839 PITRM1Q5JRX3 1037 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 SLC8B1Q6J4K2 584 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 C8orf82Q6P1X6 216 aaPredicted RBP13.34□□□□□ -0.27
CCDC3-202ENST00000378839 LAYNQ6UX15 382 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.34□□□□□ -0.27
CCDC3-202ENST00000378839 SETD3Q86TU7 594 aaPredicted RBP13.34□□□□□ -0.27
CCDC3-202ENST00000378839 REM2Q8IYK8 340 aaPredicted RBP13.34□□□□□ -0.27
CCDC3-202ENST00000378839 EID2BQ96D98 161 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 C19orf60Q96EN9 201 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 ZNF599Q96NL3 588 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 GCNAQ96QF7 691 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 NR1H4Q96RI1 486 aaPredicted RBP13.34□□□□□ -0.27
CCDC3-202ENST00000378839 UBA2Q9UBT2 640 aaPredicted RBP13.34□□□□□ -0.27
CCDC3-202ENST00000378839 AGO1Q9UL18 857 aaKnown RBP13.34□□□□□ -0.27
CCDC3-202ENST00000378839 UBA6A0AVT1 1052 aaPredicted RBP13.34□□□□□ -0.27
CCDC3-202ENST00000378839 CBX4O00257 560 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 TRIM24O15164 1050 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 INSIG1O15503 277 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 MYCP01106 439 aaPredicted RBP13.34□□□□□ -0.27
CCDC3-202ENST00000378839 UQCRBP14927 111 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 GPX3P22352 226 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 CDH4P55283 916 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 NOGQ13253 232 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 PDAP1Q13442 181 aaKnown RBP13.34□□□□□ -0.27
CCDC3-202ENST00000378839 SQLEQ14534 574 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 ZRSR2Q15696 482 aaKnown RBP13.34□□□□□ -0.27
CCDC3-202ENST00000378839 GSTA3Q16772 222 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 MRNIPQ6NTE8 343 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 SLC30A9Q6PML9 568 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 TMCO2Q7Z6W1 182 aaPredicted RBP13.34□□□□□ -0.27
CCDC3-202ENST00000378839 TICAM1Q8IUC6 712 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 TRPC4APQ8TEL6 797 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 SLC22A12Q96S37 553 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 CINPQ9BW66 212 aaPredicted RBP13.34□□□□□ -0.27
CCDC3-202ENST00000378839 ZNF225Q9UK10 706 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 LRFN2Q9ULH4 789 aa13.34□□□□□ -0.27
CCDC3-202ENST00000378839 hCG_2014768A0A024R1R8 64 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 PRSS51A0A1B0GVH4 220 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 RNASEH2AO75792 299 aaKnown RBP13.33□□□□□ -0.28
CCDC3-202ENST00000378839 AGTR2P50052 363 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 OXCT1P55809 520 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 TLR1Q15399 786 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 TSNQ15631 228 aaKnown RBP13.33□□□□□ -0.28
CCDC3-202ENST00000378839 GLT6D1Q7Z4J2 308 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 SDCCAG8Q86SQ7 713 aaPredicted RBP13.33□□□□□ -0.28
CCDC3-202ENST00000378839 RMDN1Q96DB5 314 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 SERPINI1Q99574 410 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 MID1IP1Q9NPA3 183 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 COMMD8Q9NX08 183 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 ADA2Q9NZK5 511 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 SEPT3Q9UH03 358 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 SCOCQ9UIL1 159 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 SARDHQ9UL12 918 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 ANKRD36A6QL64 1941 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 COL4A6Q14031 1691 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 PIP5K1BO14986 540 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 TSPAN12O95859 305 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 PENKP01210 267 aaPredicted RBP13.33□□□□□ -0.28
CCDC3-202ENST00000378839 HK3P52790 923 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 CCL23P55773 120 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 TRAF2Q12933 501 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 CTSL3PQ5NE16 218 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 TMEM150AQ86TG1 271 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 LPCAT1Q8NF37 534 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 PEX13Q92968 403 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms