RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 ADAMTSL2Q86TH1 951 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 CEP97Q8IW35 865 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 ULK2Q8IYT8 1036 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 PGAM4Q8N0Y7 254 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 FBXW8Q8N3Y1 598 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 FIBCD1Q8N539 461 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 TTC9BQ8N6N2 239 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 MAB21L3Q8N8X9 362 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 PCYOX1LQ8NBM8 494 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 GIMAP7Q8NHV1 300 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 BLOC1S5Q8TDH9 187 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 LPGAT1Q92604 370 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 THOC1Q96FV9 657 aaKnown RBP8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 ATXN7L3BQ96GX2 97 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 TBATAQ96M53 351 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 KLHL5Q96PQ7 755 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 MIPEPQ99797 713 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 MRPL1Q9BYD6 325 aaKnown RBP8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 ZBP1Q9H171 429 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 MTIF3Q9H2K0 278 aaKnown RBP8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 POMKQ9H5K3 350 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 CAB39LQ9H9S4 337 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 PNPOQ9NVS9 261 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 CPSF2Q9P2I0 782 aaKnown RBP8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 SLC2A6Q9UGQ3 507 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 SLC8A2Q9UPR5 921 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 SH3BP1Q9Y3L3 701 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 OR51B4Q9Y5P0 310 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 SLC30A1Q9Y6M5 507 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 LTBP2Q14767 1821 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 NYNRINQ9P2P1 1898 aaKnown RBP8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 CCDC162PA2VCL2 907 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 A8MT66 165 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 NT5C1B-RDH14C9J2C7 533 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 CBX4O00257 560 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 ZNF197O14709 1029 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 GRM6O15303 877 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 GRID2O43424 1007 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 HTRA2O43464 458 aaPredicted RBP8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 SRP72O76094 671 aaKnown RBP8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 TMCC1O94876 653 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 SEC24AO95486 1093 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 KLKB1P03952 638 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 RB1P06400 928 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 MSH3P20585 1137 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 SP100P23497 879 aaPredicted RBP8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 CHRNA4P43681 627 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 EPHB1P54762 984 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 MAXP61244 160 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 RHOAP61586 193 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 WDR5P61964 334 aaKnown RBP8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 KDSRQ06136 332 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 ZNF33BQ06732 778 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 BCL2L1Q07817 233 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 FOXM1Q08050 763 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 TRAP1Q12931 704 aaKnown RBP8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 LCP2Q13094 533 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 ART3Q13508 389 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 CSHL1Q14406 222 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 DLG2Q15700 870 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 TTLL9Q3SXZ7 439 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 TRIM60Q495X7 471 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 ZNF678Q5SXM1 525 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 ANKS6Q68DC2 871 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 FBXO46Q6PJ61 603 aaPredicted RBP8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 NAPRTQ6XQN6 538 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 RINLQ6ZS11 566 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 NECAB2Q7Z6G3 386 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 RBFAQ8N0V3 343 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 PCDH20Q8N6Y1 951 aaKnown RBP8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 NETO2Q8NC67 525 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 GRIN3AQ8TCU5 1115 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 GPR152Q8TDT2 470 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 BCL7CQ8WUZ0 217 aaPredicted RBP8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 ULK4Q96C45 1275 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 SCLYQ96I15 445 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 PRICKLE1Q96MT3 831 aaPredicted RBP8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 FAM161BQ96MY7 647 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 SAMD11Q96NU1 681 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 YME1L1Q96TA2 773 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 HOPXQ9BPY8 73 aaPredicted RBP8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 EBF4Q9BQW3 602 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 HTATIP2Q9BUP3 242 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 MUC13Q9H3R2 512 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 ZNF385DQ9H6B1 395 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 IL23AQ9NPF7 189 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 C8orf4Q9NR00 106 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 ASAH2Q9NR71 780 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 C6orf203Q9P0P8 240 aaPredicted RBP8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 MARCOQ9UEW3 520 aaPredicted RBP8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 TRMT6Q9UJA5 497 aaKnown RBP8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 HS3ST2Q9Y278 367 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 AP3M1Q9Y2T2 418 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 TRAF6Q9Y4K3 522 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 MICAL3Q7RTP6 2002 aa8.69□□□□□ -1.02
SNRNP40-202ENST00000373720 SHROOM3Q8TF72 1996 aa8.68□□□□□ -1.02
SNRNP40-202ENST00000373720 A0A0D9SEW6 157 aa8.68□□□□□ -1.02
SNRNP40-202ENST00000373720 KANSL1LA0AUZ9 987 aa8.68□□□□□ -1.02
SNRNP40-202ENST00000373720 AGAP14A8MT82 685 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms