RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 PTGFRNQ9P2B2 879 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 CDH22Q9UJ99 828 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 VPS4AQ9UN37 437 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 MFSD11O43934 449 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 OR10H3O60404 316 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 FECHP22830 423 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 SLC6A2P23975 617 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 CD52P31358 61 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 BRCC3P46736 316 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 DMPKQ09013 629 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 KLHL12Q53G59 568 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 FNBP1LQ5T0N5 605 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 HECTD2Q5U5R9 776 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 ANXA8L1Q5VT79 327 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 SDHAF4Q5VUM1 108 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 DENND5AQ6IQ26 1287 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 LPGAT1Q92604 370 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 LENG1Q96BZ8 264 aaPredicted RBP11.42□□□□□ -0.58
PTPRF-203ENST00000372407 NXNL1Q96CM4 212 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 LENG8Q96PV6 779 aaPredicted RBP11.42□□□□□ -0.58
PTPRF-203ENST00000372407 RHOBTB2Q9BYZ6 727 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 SDCBP2Q9H190 292 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 KLHL31Q9H511 634 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 GNEQ9Y223 722 aaKnown RBP11.42□□□□□ -0.58
PTPRF-203ENST00000372407 SLC27A5Q9Y2P5 690 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 STON1Q9Y6Q2 735 aa11.42□□□□□ -0.58
PTPRF-203ENST00000372407 A8MUI8 341 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 MSCO60682 206 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 LRIG2O94898 1065 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 CTPS1P17812 591 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 UGT2B15P54855 530 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 MAP2K5Q13163 448 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 GLYATQ6IB77 296 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 GIPC3Q8TF64 312 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 BTN2A3PQ96KV6 586 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 PPM1MQ96MI6 270 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 TSSK3Q96PN8 268 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 QKIQ96PU8 341 aaKnown RBP eCLIP11.41□□□□□ -0.58
PTPRF-203ENST00000372407 C12orf65Q9H3J6 166 aaKnown RBP11.41□□□□□ -0.58
PTPRF-203ENST00000372407 FAM124BQ9H5Z6 455 aaPredicted RBP11.41□□□□□ -0.58
PTPRF-203ENST00000372407 AGO3Q9H9G7 860 aaKnown RBP11.41□□□□□ -0.58
PTPRF-203ENST00000372407 ADGRE2Q9UHX3 823 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 C10orf71Q711Q0 1435 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 PTGIRP43119 386 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 CCT3P49368 545 aaKnown RBP11.41□□□□□ -0.58
PTPRF-203ENST00000372407 OLR1P78380 273 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 AP5B1Q2VPB7 878 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 ANKRD22Q5VYY1 191 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 VSTM1Q6UX27 236 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 OR2T34Q8NGX1 318 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 OR2T3Q8NH03 318 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 BORCS5Q969J3 196 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 MFSD3Q96ES6 412 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 TEFMQ96QE5 360 aaKnown RBP11.41□□□□□ -0.58
PTPRF-203ENST00000372407 GPR20Q99678 358 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 GATA5Q9BWX5 397 aaPredicted RBP11.41□□□□□ -0.58
PTPRF-203ENST00000372407 PNPLA8Q9NP80 782 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 DNAJC28Q9NX36 388 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 RAPGEFL1Q9UHV5 662 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 NOCTQ9UK39 431 aaKnown RBP11.41□□□□□ -0.58
PTPRF-203ENST00000372407 SAMD4AQ9UPU9 718 aaKnown RBP11.41□□□□□ -0.58
PTPRF-203ENST00000372407 RPTORQ8N122 1335 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 C2orf71A6NGG8 1288 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 CLDN11O75508 207 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 LRATO95237 230 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 NDST3O95803 873 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 HNF4AP41235 474 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 PSMD4P55036 377 aaKnown RBP11.41□□□□□ -0.58
PTPRF-203ENST00000372407 ABRQ12979 859 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 MTAPQ13126 283 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 ZNF846Q147U1 533 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 LSM12Q3MHD2 195 aaKnown RBP11.41□□□□□ -0.58
PTPRF-203ENST00000372407 PPM1JQ5JR12 505 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 C16orf62Q7Z3J2 963 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 COLGALT2Q8IYK4 626 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 ZNF655Q8N720 491 aaPredicted RBP11.41□□□□□ -0.58
PTPRF-203ENST00000372407 OR4K2Q8NGD2 314 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 CXorf40AQ8TE69 158 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 SLC39A8Q9C0K1 460 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 HSD3B7Q9H2F3 369 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 TOR4AQ9NXH8 423 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 NDOR1Q9UHB4 597 aa11.41□□□□□ -0.58
PTPRF-203ENST00000372407 SMIM35A0A1B0GVV1 85 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 RPP40O75818 363 aaKnown RBP11.4□□□□□ -0.58
PTPRF-203ENST00000372407 LYNP07948 512 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 PRG2P13727 222 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 TPP2P29144 1249 aaPredicted RBP11.4□□□□□ -0.58
PTPRF-203ENST00000372407 GRM3Q14832 879 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 ZNHIT3Q15649 155 aaPredicted RBP11.4□□□□□ -0.58
PTPRF-203ENST00000372407 USP41Q3LFD5 358 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 DUSP28Q4G0W2 176 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 RAET1GQ6H3X3 334 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 CERS6Q6ZMG9 384 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 ANKS1BQ7Z6G8 1248 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 ANKRD23Q86SG2 305 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 RASAL3Q86YV0 1011 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 CAMKK1Q8N5S9 505 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 NIFKQ9BYG3 293 aaKnown RBP11.4□□□□□ -0.58
PTPRF-203ENST00000372407 RHBGQ9H310 441 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 ASAH2Q9NR71 780 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms