RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ENPEPQ07075 957 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 TMEM132BQ14DG7 1078 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 PRKD1Q15139 912 aaPredicted RBP19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 LRRC49Q8IUZ0 686 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 SLC4A11Q8NBS3 891 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 CLHC1Q8NHS4 586 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 GAD1Q99259 594 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 UXTQ9UBK9 157 aaPredicted RBP19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 GMEB1Q9Y692 573 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 ANKDD1BA6NHY2 528 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 AQP1P29972 269 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 MAPKAPK2P49137 400 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 BNIP3Q12983 259 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 EMID1Q96A84 441 aaPredicted RBP19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 MLPHQ9BV36 600 aaPredicted RBP19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 MAPRE3Q9UPY8 281 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 CSH1P0DML2 217 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 CSH2P0DML3 217 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 CETPP11597 493 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 CDH15P55291 814 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 MADCAM1Q13477 382 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 DCAF12L1Q5VU92 463 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 PIK3C3Q8NEB9 887 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 EEF1AKMT1Q8WVE0 214 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 B4GALT5O43286 388 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 PPP1R11O60927 126 aaPredicted RBP19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 NDUFS2O75306 463 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 CST3P01034 146 aaPredicted RBP19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 UGT2B15P54855 530 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 ELP6Q0PNE2 266 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 RAP1GAP2Q684P5 730 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 NALCNQ8IZF0 1738 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 TMEM86AQ8N2M4 240 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 OR4L1Q8NH43 312 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 DIRAS2Q96HU8 199 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 H7C0S8 307 aa19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 NCK1P16333 377 aa19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 HOXB6P17509 224 aaKnown RBP19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 THOP1P52888 689 aa19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 PAOXQ6QHF9 649 aa19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 GLT1D1Q96MS3 346 aa19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 GLOD4Q9HC38 313 aa19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 NKIRAS2Q9NYR9 191 aa19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 SYNPO2Q9UMS6 1093 aa19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 MFSD11O43934 449 aa19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 LYPLA2O95372 231 aa19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 PRG2P13727 222 aa19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 PSMA1P25786 263 aaKnown RBP19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 TM4SF1P30408 202 aa19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 PTPN5P54829 565 aa19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 MRPS5P82675 430 aaKnown RBP19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 HECTD2Q5U5R9 776 aa19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 PLK4O00444 970 aa19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 RNASEH1O60930 286 aaKnown RBP19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 MAFO75444 373 aaPredicted RBP19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 XRCC1P18887 633 aaPredicted RBP19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 SMIM11AP58511 58 aa19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 GNA12Q03113 381 aa19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 CDK18Q07002 472 aa19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 STRADAQ7RTN6 431 aa19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 GPR156Q8NFN8 814 aa19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 MOV10Q9HCE1 1003 aaKnown RBP19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 COMMD9Q9P000 198 aa19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 AJAP1Q9UKB5 411 aaPredicted RBP19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 ELOVL7A1L3X0 281 aa19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 PGRMC2O15173 223 aa19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 WEE1P30291 646 aa19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 CORO2BQ9UQ03 480 aa19.49■□□□□ 0.71
CCDC88B-202ENST00000356786 EI24O14681 340 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 ADRA1BP35368 520 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 SCN1BQ07699 218 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 NPY5RQ15761 445 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 SLC25A52Q3SY17 297 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 PPM1LQ5SGD2 360 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 GPR158Q5T848 1215 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 LIN54Q6MZP7 749 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 ANKRD23Q86SG2 305 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 OR8H1Q8NGG4 311 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 MTFR1LQ9H019 292 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 FAM198AQ9UFP1 575 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 H0YGN5 161 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 METTL18O95568 372 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 MTA1Q13330 715 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 SLC39A12Q504Y0 691 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 TMEM198Q66K66 360 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 DCBLD1Q8N8Z6 715 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 SMYD1Q8NB12 490 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 TOP1MTQ969P6 601 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 KAT8Q9H7Z6 458 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 NFS1Q9Y697 457 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 TP73O15350 636 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 C4BPAP04003 597 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 AXLP30530 894 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 MERTKQ12866 999 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 SLC26A9Q7LBE3 791 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 FSTL5Q8N475 847 aaPredicted RBP19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 ITFG2Q969R8 447 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 AZIN2Q96A70 460 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 CDK5RAP1Q96SZ6 601 aaKnown RBP19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms