RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 CHST15Q7LFX5 561 aaPredicted RBP10.14□□□□□ -0.79
USP54-201ENST00000339859 LCN9Q8WX39 176 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 ZNF556Q9HAH1 456 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 SH3BP4Q9P0V3 963 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 SCML1Q9UN30 329 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 SOX13Q9UN79 622 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 C16orf96A6NNT2 1141 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 AGRPO00253 132 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 SNAP91O60641 907 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 STC2O76061 302 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 OTCP00480 354 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 NTSR1P30989 418 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 ACVRL1P37023 503 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 RPS21P63220 83 aaKnown RBP10.13□□□□□ -0.79
USP54-201ENST00000339859 PAFAH1B3Q15102 231 aaKnown RBP10.13□□□□□ -0.79
USP54-201ENST00000339859 CYP51A1Q16850 503 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 SLC8B1Q6J4K2 584 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 IL27RAQ6UWB1 636 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 CLYBLQ8N0X4 340 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 ALG3Q92685 438 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 FOXJ1Q92949 421 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 TCF12Q99081 682 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 INTS10Q9NVR2 710 aaKnown RBP10.13□□□□□ -0.79
USP54-201ENST00000339859 NDUFB5O43674 189 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 CCNHP51946 323 aaPredicted RBP10.13□□□□□ -0.79
USP54-201ENST00000339859 GPR33Q49SQ1 333 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 PATL1Q86TB9 770 aaKnown RBP10.13□□□□□ -0.79
USP54-201ENST00000339859 KLHDC7BQ96G42 594 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 SRMSQ9H3Y6 488 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 CARS2Q9HA77 564 aaKnown RBP10.13□□□□□ -0.79
USP54-201ENST00000339859 RXFP1Q9HBX9 757 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 ATAD3AQ9NVI7 634 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 THEGQ9P2T0 379 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 PRMT3O60678 531 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 COX7A2P14406 83 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 SUOXP51687 545 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 CTBP1Q13363 440 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 MED21Q13503 144 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 UAP1L1Q3KQV9 507 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 DRICH1Q6PGQ1 229 aaPredicted RBP10.13□□□□□ -0.79
USP54-201ENST00000339859 AMZ2Q86W34 360 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 SYT12Q8IV01 421 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 PTGR2Q8N8N7 351 aaPredicted RBP10.13□□□□□ -0.79
USP54-201ENST00000339859 HIPK4Q8NE63 616 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 SPATA22Q8NHS9 363 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 SETD7Q8WTS6 366 aaKnown RBP10.13□□□□□ -0.79
USP54-201ENST00000339859 SELENOMQ8WWX9 145 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 MAGED4Q96JG8 741 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 MRPL46Q9H2W6 279 aaKnown RBP10.13□□□□□ -0.79
USP54-201ENST00000339859 NMUR1Q9HB89 426 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 SIRPGQ9P1W8 387 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 TBX21Q9UL17 535 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 REXO2Q9Y3B8 237 aaKnown RBP10.13□□□□□ -0.79
USP54-201ENST00000339859 ZNF487B1APH4 448 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 GOT2P00505 430 aaKnown RBP10.13□□□□□ -0.79
USP54-201ENST00000339859 HLA-DQB2P05538 268 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 ATP5F1P24539 256 aaPredicted RBP10.13□□□□□ -0.79
USP54-201ENST00000339859 PTGER3P43115 390 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 AP5B1Q2VPB7 878 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 TMEM164Q5U3C3 297 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 ICE2Q659A1 982 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 ERN2Q76MJ5 926 aaKnown RBP10.13□□□□□ -0.79
USP54-201ENST00000339859 CYP4Z1Q86W10 505 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 HORMAD1Q86X24 394 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 DSELQ8IZU8 1212 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 FNDC5Q8NAU1 212 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 RASSF4Q9H2L5 321 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 SEMA4BQ9NPR2 832 aaPredicted RBP10.13□□□□□ -0.79
USP54-201ENST00000339859 CHCHD3Q9NX63 227 aaKnown RBP10.13□□□□□ -0.79
USP54-201ENST00000339859 WDR90Q96KV7 1748 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 PRR5-ARHGAP8B1AHC4 643 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 C8GP07360 202 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 ALPIP09923 528 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 BGNP21810 368 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 CALRP27797 417 aaKnown RBP10.13□□□□□ -0.79
USP54-201ENST00000339859 VIPR2P41587 438 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 HECTD2Q5U5R9 776 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 RASIP1Q5U651 963 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 TAS1R1Q7RTX1 841 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 EFCAB3Q8N7B9 438 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 MTFMTQ96DP5 389 aaKnown RBP10.13□□□□□ -0.79
USP54-201ENST00000339859 FAM83CQ9BQN1 747 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 THUMPD3Q9BV44 507 aaKnown RBP10.13□□□□□ -0.79
USP54-201ENST00000339859 OR2AG1Q9H205 316 aa10.13□□□□□ -0.79
USP54-201ENST00000339859 OR2AG2A6NM03 316 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 GABRDO14764 452 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 TFEBP19484 476 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 SERINC3Q13530 473 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 PLEKHG6Q3KR16 790 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 ALKAL1Q6UXT8 129 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 SLC9B2Q86UD5 537 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 ZNF614Q8N883 585 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 NXPE3Q969Y0 559 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 CCDC138Q96M89 665 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 TMEM237Q96Q45 408 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 KATNBL1Q9H079 304 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 RHOJQ9H4E5 214 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 SOBPA7XYQ1 873 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 UBDO15205 165 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 TSPAN6O43657 245 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms