RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 DCP2Q8IU60 420 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 GLYCTKQ8IVS8 523 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 MCPH1Q8NEM0 835 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 BBS10Q8TAM1 723 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 PMEPA1Q969W9 287 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 DYNLL2Q96FJ2 89 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 ACBD6Q9BR61 282 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 NELFAQ9H3P2 528 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 DHX35Q9H5Z1 703 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 PATZ1Q9HBE1 687 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 C3orf14Q9HBI5 128 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 SMCO4Q9NRQ5 59 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 ADPRHL2Q9NX46 363 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 LSM7Q9UK45 103 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 SLC30A1Q9Y6M5 507 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 ZNF644Q9H582 1327 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 OR7A17O14581 309 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 MT-CO1P00395 513 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 LDLRP01130 860 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 IFNA1P01562 189 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 CYP2F1P24903 491 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 SLC26A5P58743 744 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 HNRNPKP61978 463 aaKnown RBP eCLIP7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 SEC23AQ15436 765 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 ATF7IP2Q5U623 682 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 TMEM179Q6ZVK1 233 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 ZNF398Q8TD17 642 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 IL22RA2Q969J5 263 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 TAMM41Q96BW9 452 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 WRNIP1Q96S55 665 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 CDK19Q9BWU1 502 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 ZNF436Q9C0F3 470 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 SYT4Q9H2B2 425 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 PLEKHA1Q9HB21 404 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 C11orf16Q9NQ32 467 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 ABHD10Q9NUJ1 306 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 PTPRCP08575 1304 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 SCN2BO60939 215 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 ADAM11O75078 769 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 THRAP10827 490 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 CBR1P16152 277 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 ERP29P30040 261 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 ATP2C1P98194 919 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 CRTC2Q53ET0 693 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 EIF5AL1Q6IS14 154 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 MOXD1Q6UVY6 613 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 GALNT5Q7Z7M9 940 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 ANKRD23Q86SG2 305 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 LIX1Q8N485 282 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 SNIP1Q8TAD8 396 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 STK32AQ8WU08 396 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 NR4A3Q92570 626 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 AP2M1Q96CW1 435 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 MGME1Q9BQP7 344 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 MRI1Q9BV20 369 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 DPY30Q9C005 99 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 ARHGAP20Q9P2F6 1191 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 EPRSP07814 1512 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 ZMYM6O95789 1325 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 LOC102723971A0A1B0GUV8 181 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 WASH3PC4AMC7 463 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 J3QRK9 145 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 RFXAPO00287 272 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 RECQL5O94762 991 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 SLC6A4P31645 630 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 ARL2P36404 184 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 ETV4P43268 484 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 MERTKQ12866 999 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 NT5DC3Q86UY8 548 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 OR2W6PQ8NHA6 318 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 SLC38A4Q969I6 547 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 NECAB3Q96P71 396 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 MACROD1Q9BQ69 325 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 TAS2R13Q9NYV9 303 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 GTF2IRD1Q9UHL9 959 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 GOLT1BQ9Y3E0 138 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 ARL2-SNX15V9GYD0 113 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 KDM3AQ9Y4C1 1321 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 NEMP2A6NFY4 417 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 FBP2O00757 339 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 PHOX2AO14813 284 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 FHP07954 510 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 MEOX1P50221 254 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 MFSD13AQ14CX5 517 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 ZNF718Q3SXZ3 478 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 EFHC2Q5JST6 749 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 POMZP3Q6PJE2 187 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 NUDT13Q86X67 352 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 TRAPPC5Q8IUR0 188 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 CERKQ8TCT0 537 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 SLC20A1Q8WUM9 679 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 P2RX5Q93086 422 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 RPH3ALQ9UNE2 315 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 DRG1Q9Y295 367 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 CDY1Q9Y6F8 540 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 TOX3O15405 576 aaPredicted RBP7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 DDX3YO15523 660 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 SLC2A4P14672 509 aa7.62□□□□□ -1.19
LIMCH1-201ENST00000313860 USF1P22415 310 aaPredicted RBP7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms