RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 CCDC167Q9P0B6 97 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 TBC1D14Q9P2M4 693 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 FBXO9Q9UK97 447 aaPredicted RBP10.9□□□□□ -0.66
LSM3-201ENST00000306024 FARP1Q9Y4F1 1045 aaPredicted RBP10.9□□□□□ -0.66
LSM3-201ENST00000306024 SPO11Q9Y5K1 396 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 EEF2KO00418 725 aaKnown RBP10.9□□□□□ -0.66
LSM3-201ENST00000306024 ZBTB14O43829 449 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 B4GALT3O60512 393 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 RFPL1O75677 317 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 DAOAP59103 153 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 IL1RL1Q01638 556 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 NFATC3Q12968 1075 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 ZIK1Q3SY52 487 aaPredicted RBP10.9□□□□□ -0.66
LSM3-201ENST00000306024 TMEM173Q86WV6 379 aaPredicted RBP10.9□□□□□ -0.66
LSM3-201ENST00000306024 DNAAF3Q8N9W5 541 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 NAA50Q9GZZ1 169 aaKnown RBP10.9□□□□□ -0.66
LSM3-201ENST00000306024 ABCC13Q9NSE7 274 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 MSRAQ9UJ68 235 aa10.9□□□□□ -0.66
LSM3-201ENST00000306024 C2CD4BA6NLJ0 364 aa10.9□□□□□ -0.67
LSM3-201ENST00000306024 SNNO75324 88 aaPredicted RBP10.9□□□□□ -0.67
LSM3-201ENST00000306024 BCAS2O75934 225 aaPredicted RBP10.9□□□□□ -0.67
LSM3-201ENST00000306024 TSPAN9O75954 239 aa10.9□□□□□ -0.67
LSM3-201ENST00000306024 GJB5O95377 273 aa10.9□□□□□ -0.67
LSM3-201ENST00000306024 PIGNO95427 931 aa10.9□□□□□ -0.67
LSM3-201ENST00000306024 SOD2P04179 222 aa10.9□□□□□ -0.67
LSM3-201ENST00000306024 MZF1P28698 734 aaPredicted RBP10.9□□□□□ -0.67
LSM3-201ENST00000306024 PRKAA2P54646 552 aa10.9□□□□□ -0.67
LSM3-201ENST00000306024 CLPPQ16740 277 aaPredicted RBP10.9□□□□□ -0.67
LSM3-201ENST00000306024 SH3PXD2AQ5TCZ1 1133 aa10.9□□□□□ -0.67
LSM3-201ENST00000306024 LRRC38Q5VT99 294 aa10.9□□□□□ -0.67
LSM3-201ENST00000306024 BROXQ5VW32 411 aa10.9□□□□□ -0.67
LSM3-201ENST00000306024 TMEM198Q66K66 360 aa10.9□□□□□ -0.67
LSM3-201ENST00000306024 CRTC3Q6UUV7 619 aa10.9□□□□□ -0.67
LSM3-201ENST00000306024 UNC5AQ6ZN44 842 aa10.9□□□□□ -0.67
LSM3-201ENST00000306024 Q8N9G6 341 aaPredicted RBP10.9□□□□□ -0.67
LSM3-201ENST00000306024 COLGALT1Q8NBJ5 622 aa10.9□□□□□ -0.67
LSM3-201ENST00000306024 MZB1Q8WU39 189 aa10.9□□□□□ -0.67
LSM3-201ENST00000306024 LRRN4Q8WUT4 740 aa10.9□□□□□ -0.67
LSM3-201ENST00000306024 C17orf80Q9BSJ5 609 aa10.9□□□□□ -0.67
LSM3-201ENST00000306024 DHRS4Q9BTZ2 278 aa10.9□□□□□ -0.67
LSM3-201ENST00000306024 POLE4Q9NR33 117 aa10.9□□□□□ -0.67
LSM3-201ENST00000306024 CROCCQ5TZA2 2017 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 H0Y626 953 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 TMEM189-UBE2V1I3L0A0 370 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 APOC4-APOC2K7ER74 178 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 HDAC3O15379 428 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 OAZ2O95190 189 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 NADKO95544 446 aaPredicted RBP10.89□□□□□ -0.67
LSM3-201ENST00000306024 APOC2P02655 101 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 CKMP06732 381 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 IFNA8P32881 189 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 GLRBP48167 497 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 GPR15P49685 360 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 SEPHS1P49903 392 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 CRADDP78560 199 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 OGDHQ02218 1023 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 GPR17Q13304 367 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 PPM1JQ5JR12 505 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 CYP2U1Q7Z449 544 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 PDPRQ8NCN5 879 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 MRPS31Q92665 395 aaKnown RBP10.89□□□□□ -0.67
LSM3-201ENST00000306024 SGF29Q96ES7 293 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 MAGED4Q96JG8 741 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 SLC9A7Q96T83 725 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 SLC29A1Q99808 456 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 TCF25Q9BQ70 676 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 SNRNP25Q9BV90 132 aaKnown RBP10.89□□□□□ -0.67
LSM3-201ENST00000306024 MOV10Q9HCE1 1003 aaKnown RBP10.89□□□□□ -0.67
LSM3-201ENST00000306024 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.89□□□□□ -0.673e-6■□□□□ 9.2
LSM3-201ENST00000306024 SMPD4Q9NXE4 827 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 PCDHGA3Q9Y5H0 932 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 ILVBLA1L0T0 632 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 TYW5A2RUC4 315 aaKnown RBP10.89□□□□□ -0.67
LSM3-201ENST00000306024 ANKRD34BA5PLL1 514 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 GNGT2O14610 69 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 CCNKO75909 580 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 MT-CO1P00395 513 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 GFAPP14136 432 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 KDELR1P24390 212 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 MPSTP25325 297 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 NR4A2P43354 598 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 KRT6CP48668 564 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 TXNL4AP83876 142 aaKnown RBP10.89□□□□□ -0.67
LSM3-201ENST00000306024 MBLAC2Q68D91 279 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 RBM23Q86U06 439 aaKnown RBP10.89□□□□□ -0.67
LSM3-201ENST00000306024 MON1AQ86VX9 555 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 PCYOX1LQ8NBM8 494 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 S100ZQ8WXG8 99 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 CITED4Q96RK1 184 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 HGH1Q9BTY7 390 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 SLC28A3Q9HAS3 691 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 CXXC1Q9P0U4 656 aaPredicted RBP10.89□□□□□ -0.67
LSM3-201ENST00000306024 GMIPQ9P107 970 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 RABL2AQ9UBK7 228 aaPredicted RBP10.89□□□□□ -0.67
LSM3-201ENST00000306024 SFMBT1Q9UHJ3 866 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 A0A1W2PQH9 124 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 MTMR11A4FU01 709 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 CHADO15335 359 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 ITGB8P26012 769 aa10.89□□□□□ -0.67
LSM3-201ENST00000306024 ABCG1P45844 678 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms