RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 PEX13Q92968 403 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 FAM161BQ96MY7 647 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 WRAP53Q9BUR4 548 aaKnown RBP11.56□□□□□ -0.56
VPS4A-201ENST00000254950 C12orf65Q9H3J6 166 aaKnown RBP11.56□□□□□ -0.56
VPS4A-201ENST00000254950 IRAK4Q9NWZ3 460 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 GDE1Q9NZC3 331 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 IL37Q9NZH6 218 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 COPG2Q9UBF2 871 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 IL36AQ9UHA7 158 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 L3MBTL1Q9Y468 752 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 EDDM13A0A1B0GTR0 161 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 TMEM114B3SHH9 223 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 MYO1CO00159 1063 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 KLKB1P03952 638 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 IRS1P35568 1242 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 PGFP49763 221 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 NAA20P61599 178 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 SEMG2Q02383 582 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 GRSF1Q12849 480 aaKnown RBP eCLIP11.56□□□□□ -0.56
VPS4A-201ENST00000254950 EIF4HQ15056 248 aaKnown RBP11.56□□□□□ -0.56
VPS4A-201ENST00000254950 RANBP10Q6VN20 620 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 SYTL1Q8IYJ3 562 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 TUBGCP5Q96RT8 1024 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 KCTD5Q9NXV2 234 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 KCNK4Q9NYG8 393 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 ADA2Q9NZK5 511 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 OPTCQ9UBM4 332 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 KCTD3Q9Y597 815 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 CD70P32970 193 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 PGM1P36871 562 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 RPL14P50914 215 aaKnown RBP11.56□□□□□ -0.56
VPS4A-201ENST00000254950 THOP1P52888 689 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 LRRC73Q5JTD7 316 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 ZC3HC1Q86WB0 502 aaKnown RBP11.56□□□□□ -0.56
VPS4A-201ENST00000254950 NECTIN4Q96NY8 510 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 MRPL1Q9BYD6 325 aaKnown RBP11.56□□□□□ -0.56
VPS4A-201ENST00000254950 LINC00597Q9H2U6 94 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 DYRK1BQ9Y463 629 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 E9PBE3 544 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 KLHL41O60662 606 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 CDK14O94921 469 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 PGLSO95336 258 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 KRT6AP02538 564 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 KRT6BP04259 564 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 RPN2P04844 631 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 HALP42357 657 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 KRT6CP48668 564 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 CAMK2GQ13555 558 aaPredicted RBP11.55□□□□□ -0.56
VPS4A-201ENST00000254950 DDX39BQ13838 428 aaKnown RBP11.55□□□□□ -0.56
VPS4A-201ENST00000254950 PDE1CQ14123 709 aaPredicted RBP11.55□□□□□ -0.56
VPS4A-201ENST00000254950 QPCTQ16769 361 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 SNX20Q7Z614 316 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 PCYOX1LQ8NBM8 494 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 ZNF641Q96N77 438 aaPredicted RBP11.55□□□□□ -0.56
VPS4A-201ENST00000254950 MGME1Q9BQP7 344 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 HGH1Q9BTY7 390 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 EFHD1Q9BUP0 239 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 TDRD1Q9BXT4 1180 aaKnown RBP11.55□□□□□ -0.56
VPS4A-201ENST00000254950 ANLNQ9NQW6 1124 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 TMEM216Q9P0N5 145 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 SLCO3A1Q9UIG8 710 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 CDH7Q9ULB5 785 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.55□□□□□ -0.56
VPS4A-201ENST00000254950 TBC1D3DA0A087WVF3 549 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 TBC1D3IA0A087WXS9 549 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 TBC1D3EA0A087X179 549 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 TBC1D3KA0A087X1G2 549 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 TBC1D3FA6NER0 549 aaPredicted RBP11.55□□□□□ -0.56
VPS4A-201ENST00000254950 TBC1D3LB9A6J9 549 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 SNUPNO95149 360 aaKnown RBP11.55□□□□□ -0.56
VPS4A-201ENST00000254950 AHSGP02765 367 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 TBC1D3HP0C7X1 549 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 SESN3P58005 492 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 STEAP4Q687X5 459 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 TBC1D3GQ6DHY5 549 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 TBC1D3CQ6IPX1 549 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 DPY19L3Q6ZPD9 716 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 PHACTR4Q8IZ21 702 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 TBC1D3Q8IZP1 549 aaPredicted RBP11.55□□□□□ -0.56
VPS4A-201ENST00000254950 INPP5DQ92835 1189 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 ZFYVE19Q96K21 471 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 KXD1Q9BQD3 176 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 CACYBPQ9HB71 228 aaKnown RBP11.55□□□□□ -0.56
VPS4A-201ENST00000254950 MOCS1Q9NZB8 636 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 PRDM4Q9UKN5 801 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 UPK3BL1B0FP48 263 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 UPK3BL2E5RIL1 263 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 K7ERQ8 282 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 MAP3K13O43283 966 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 KATNA1O75449 491 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 UBOX5O94941 541 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 ANP32DO95626 131 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 GSRP00390 522 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 PSMC3P17980 439 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 SEC13P55735 322 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 C2orf27AQ580R0 203 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 METTL6Q8TCB7 284 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 ACOX2Q99424 681 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 TACO1Q9BSH4 297 aaKnown RBP11.55□□□□□ -0.56
VPS4A-201ENST00000254950 ABCG8Q9H221 673 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms