RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 NIPSNAP2O75323 286 aa21.27■□□□□ 0.99
TRIM28-201ENST00000253024 KATNA1O75449 491 aa21.27■□□□□ 0.99
TRIM28-201ENST00000253024 PCNAP12004 261 aa21.27■□□□□ 0.99
TRIM28-201ENST00000253024 RPL17P18621 184 aaKnown RBP21.27■□□□□ 0.99
TRIM28-201ENST00000253024 RANBP1P43487 201 aa21.27■□□□□ 0.99
TRIM28-201ENST00000253024 XIAPP98170 497 aa21.27■□□□□ 0.99
TRIM28-201ENST00000253024 RHDQ02161 417 aa21.27■□□□□ 0.99
TRIM28-201ENST00000253024 RALGPS2Q86X27 583 aaPredicted RBP21.27■□□□□ 0.99
TRIM28-201ENST00000253024 TSPAN14Q8NG11 270 aa21.27■□□□□ 0.99
TRIM28-201ENST00000253024 OR6K2Q8NGY2 324 aa21.27■□□□□ 0.99
TRIM28-201ENST00000253024 DGCR14Q96DF8 476 aaKnown RBP21.27■□□□□ 0.99
TRIM28-201ENST00000253024 CCDC97Q96F63 343 aaPredicted RBP21.27■□□□□ 0.99
TRIM28-201ENST00000253024 RAB26Q9ULW5 256 aa21.27■□□□□ 0.99
TRIM28-201ENST00000253024 DICER1Q9UPY3 1922 aaKnown RBP21.26■□□□□ 0.99
TRIM28-201ENST00000253024 TIAL1Q01085 375 aaKnown RBP eCLIP21.26■□□□□ 0.99
TRIM28-201ENST00000253024 EIF4EBP2Q13542 120 aaPredicted RBP21.26■□□□□ 0.99
TRIM28-201ENST00000253024 FBXL20Q96IG2 436 aa21.26■□□□□ 0.99
TRIM28-201ENST00000253024 GPR21Q99679 349 aa21.26■□□□□ 0.99
TRIM28-201ENST00000253024 SLC25A23Q9BV35 468 aa21.26■□□□□ 0.99
TRIM28-201ENST00000253024 CCND3P30281 292 aaPredicted RBP21.26■□□□□ 0.99
TRIM28-201ENST00000253024 DUSP4Q13115 394 aa21.26■□□□□ 0.99
TRIM28-201ENST00000253024 TIGD2Q4W5G0 525 aa21.26■□□□□ 0.99
TRIM28-201ENST00000253024 TSPAN17Q96FV3 270 aa21.26■□□□□ 0.99
TRIM28-201ENST00000253024 COMMD3-BMI1R4GMX3 469 aa21.26■□□□□ 0.99
TRIM28-201ENST00000253024 MIA3Q5JRA6 1907 aa21.26■□□□□ 0.99
TRIM28-201ENST00000253024 AZIN1O14977 448 aa21.25■□□□□ 0.99
TRIM28-201ENST00000253024 TRIM24O15164 1050 aa21.25■□□□□ 0.99
TRIM28-201ENST00000253024 NDST2P52849 883 aa21.25■□□□□ 0.99
TRIM28-201ENST00000253024 PLCL1Q15111 1095 aa21.25■□□□□ 0.99
TRIM28-201ENST00000253024 RBBP7Q16576 425 aa21.25■□□□□ 0.99
TRIM28-201ENST00000253024 SIDT2Q8NBJ9 832 aaKnown RBP21.25■□□□□ 0.99
TRIM28-201ENST00000253024 ZFAND2BQ8WV99 257 aa21.25■□□□□ 0.99
TRIM28-201ENST00000253024 GTF3C5Q9Y5Q8 519 aaPredicted RBP21.25■□□□□ 0.99
TRIM28-201ENST00000253024 CBX4O00257 560 aa21.25■□□□□ 0.99
TRIM28-201ENST00000253024 STAMBPO95630 424 aa21.25■□□□□ 0.99
TRIM28-201ENST00000253024 MTHFD2P13995 350 aa21.25■□□□□ 0.99
TRIM28-201ENST00000253024 DNAJB13P59910 316 aa21.25■□□□□ 0.99
TRIM28-201ENST00000253024 HERVK_113P63132 956 aa21.25■□□□□ 0.99
TRIM28-201ENST00000253024 PRKCQQ04759 706 aa21.25■□□□□ 0.99
TRIM28-201ENST00000253024 HERC3Q15034 1050 aa21.25■□□□□ 0.99
TRIM28-201ENST00000253024 ZIK1Q3SY52 487 aaPredicted RBP21.25■□□□□ 0.99
TRIM28-201ENST00000253024 RTN4RL1Q86UN2 441 aaPredicted RBP21.25■□□□□ 0.99
TRIM28-201ENST00000253024 CDYL2Q8N8U2 506 aa21.25■□□□□ 0.99
TRIM28-201ENST00000253024 LPCAT1Q8NF37 534 aa21.25■□□□□ 0.99
TRIM28-201ENST00000253024 SUSD3Q96L08 255 aa21.25■□□□□ 0.99
TRIM28-201ENST00000253024 ERVK-6Q9BXR3 956 aa21.25■□□□□ 0.99
TRIM28-201ENST00000253024 ABCG8Q9H221 673 aa21.25■□□□□ 0.99
TRIM28-201ENST00000253024 CATSPERZQ9NTU4 200 aa21.25■□□□□ 0.99
TRIM28-201ENST00000253024 POLG2Q9UHN1 485 aa21.25■□□□□ 0.99
TRIM28-201ENST00000253024 ZNF37AP17032 561 aaPredicted RBP21.24■□□□□ 0.99
TRIM28-201ENST00000253024 MAP7Q14244 749 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 C11orf91Q3C1V1 193 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 VARS2Q5ST30 1063 aaKnown RBP21.24■□□□□ 0.99
TRIM28-201ENST00000253024 OTUD3Q5T2D3 398 aaPredicted RBP21.24■□□□□ 0.99
TRIM28-201ENST00000253024 MON1AQ86VX9 555 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 B4GALNT2Q8NHY0 566 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 ETAA1Q9NY74 926 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 USP34Q70CQ2 3546 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 M0QZQ0 153 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 GPX3P22352 226 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 SLC5A2P31639 672 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 CYP2C18P33260 490 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 UFM1P61960 85 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 CRHR2Q13324 411 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 PTPRNQ16849 979 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 UGT3A2Q3SY77 523 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 CLYBLQ8N0X4 340 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 OR4L1Q8NH43 312 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 DLG3Q92796 817 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 FAM193BQ96PV7 902 aaPredicted RBP21.24■□□□□ 0.99
TRIM28-201ENST00000253024 GPR62Q9BZJ7 368 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 GKN1Q9NS71 199 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 FLT3LGP49771 235 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 CYP51A1Q16850 503 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 CLLU1OSQ5K130 101 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 GLB1LQ6UWU2 654 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 RSPO2Q6UXX9 243 aaPredicted RBP21.24■□□□□ 0.99
TRIM28-201ENST00000253024 DNAJC14Q6Y2X3 702 aaPredicted RBP21.24■□□□□ 0.99
TRIM28-201ENST00000253024 SLC15A3Q8IY34 581 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 FBXO39Q8N4B4 442 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 RANBP9Q96S59 729 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 UPF3AQ9H1J1 476 aaKnown RBP21.24■□□□□ 0.99
TRIM28-201ENST00000253024 CCDC68Q9H2F9 335 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 RHBDL2Q9NX52 303 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 CMTM6Q9NX76 183 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 THEGQ9P2T0 379 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 OAZ3Q9UMX2 235 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 TLR6Q9Y2C9 796 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 TBC1D30Q9Y2I9 924 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 SLC45A1Q9Y2W3 748 aa21.24■□□□□ 0.99
TRIM28-201ENST00000253024 HTRA2O43464 458 aaPredicted RBP21.23■□□□□ 0.99
TRIM28-201ENST00000253024 DUSP11O75319 330 aaKnown RBP21.23■□□□□ 0.99
TRIM28-201ENST00000253024 CREB5Q02930 508 aa21.23■□□□□ 0.99
TRIM28-201ENST00000253024 NFYCQ13952 458 aa21.23■□□□□ 0.99
TRIM28-201ENST00000253024 PAGE3Q5JUK9 113 aa21.23■□□□□ 0.99
TRIM28-201ENST00000253024 NADSYN1Q6IA69 706 aa21.23■□□□□ 0.99
TRIM28-201ENST00000253024 PIANPQ8IYJ0 282 aa21.23■□□□□ 0.99
TRIM28-201ENST00000253024 SMPD4Q9NXE4 827 aa21.23■□□□□ 0.99
TRIM28-201ENST00000253024 SUCOQ9UBS9 1254 aaKnown RBP21.23■□□□□ 0.99
TRIM28-201ENST00000253024 NDUFAF1Q9Y375 327 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms