RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 MYCT1Q8N699 235 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 ZNF527Q8NB42 609 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 VPS37AQ8NEZ2 397 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 ARRDC2Q8TBH0 407 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 RAB40AQ8WXH6 277 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 KCNJ9Q92806 393 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 ATOH1Q92858 354 aaPredicted RBP0.47□□□□□ -2.33
VPS35-212ENST00000640313 SNAPC3Q92966 411 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 C3orf49Q96BT1 292 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 ELP4Q96EB1 424 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 TNIP3Q96KP6 325 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 PPP1R13BQ96KQ4 1090 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 C3orf30Q96M34 536 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 TRAPPC9Q96Q05 1148 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 CSF3RQ99062 836 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 ARPC5LQ9BPX5 153 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 ISCA1Q9BUE6 129 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP0.47□□□□□ -2.33
VPS35-212ENST00000640313 CADM1Q9BY67 442 aaKnown RBP0.47□□□□□ -2.33
VPS35-212ENST00000640313 GLIS2Q9BZE0 524 aaPredicted RBP0.47□□□□□ -2.33
VPS35-212ENST00000640313 LHPPQ9H008 270 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 XRN2Q9H0D6 950 aaKnown RBP eCLIP0.47□□□□□ -2.33
VPS35-212ENST00000640313 KCNN2Q9H2S1 579 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 MROH8Q9H579 483 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 ESRP2Q9H6T0 727 aaKnown RBP0.47□□□□□ -2.33
VPS35-212ENST00000640313 FKRPQ9H9S5 495 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 PLEKHA5Q9HAU0 1116 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 SAYSD1Q9NPB0 183 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 CHST11Q9NPF2 352 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 NOX4Q9NPH5 578 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 ANKRD10Q9NXR5 420 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 SAGE1Q9NXZ1 904 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 C1RLQ9NZP8 487 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 ZKSCAN7Q9P0L1 754 aaPredicted RBP0.47□□□□□ -2.33
VPS35-212ENST00000640313 HSPB7Q9UBY9 170 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 ASIC3Q9UHC3 531 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 CDH22Q9UJ99 828 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 SLC25A13Q9UJS0 675 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 TINAGQ9UJW2 476 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 DNAJC16Q9Y2G8 782 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 DLGAP4Q9Y2H0 992 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 LRCH1Q9Y2L9 728 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 PAM16Q9Y3D7 125 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 C2CD2Q9Y426 696 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 DAAM1Q9Y4D1 1078 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 RIPOR2Q9Y4F9 1068 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 CEP83Q9Y592 693 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 A3GALT2U3KPV4 340 aa0.47□□□□□ -2.33
VPS35-212ENST00000640313 DISP3Q9P2K9 1392 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 ABCA7Q8IZY2 2146 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 AHNAKQ09666 5890 aaKnown RBP0.46□□□□□ -2.34
VPS35-212ENST00000640313 GOLGA6L10A0A0M3HER8 536 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 C17orf113A0A1B0GUU1 675 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 CTAGE9A4FU28 777 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 KLRF2D3W0D1 207 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 DVL1O14640 695 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 PER2O15055 1255 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 KLK10O43240 276 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 HSPA12AO43301 675 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 BCL2L11O43521 198 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 PLRG1O43660 514 aaKnown RBP0.46□□□□□ -2.34
VPS35-212ENST00000640313 PI15O43692 258 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 SLC25A17O43808 307 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 PLIN1O60240 522 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 CCNT1O60563 726 aaKnown RBP0.46□□□□□ -2.34
VPS35-212ENST00000640313 NBNO60934 754 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 NDUFS7O75251 213 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 ZFAND5O76080 213 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 FTCDO95954 541 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 HEXAP06865 529 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 CHRM4P08173 479 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 CYC1P08574 325 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 CTAGE8P0CG41 777 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 ZNF8P17098 575 aaPredicted RBP0.46□□□□□ -2.34
VPS35-212ENST00000640313 AGAP20933 346 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 GSTM2P28161 218 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 CHATP28329 748 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 GPR12P47775 334 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 PGFP49763 221 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 RBM5P52756 815 aaKnown RBP eCLIP0.46□□□□□ -2.34
VPS35-212ENST00000640313 DVL1P1P54792 670 aaPredicted RBP0.46□□□□□ -2.34
VPS35-212ENST00000640313 HDAC4P56524 1084 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 KRTAP10-10P60014 251 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 GRIK3Q13003 919 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 GAGE5Q13069 117 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 GAGE6Q13070 117 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 ENPP2Q13822 863 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 TUBB2AQ13885 445 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 CAPSQ13938 189 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 PRKG1Q13976 671 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 TRIM14Q14142 442 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 RPS6KA2Q15349 733 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 TAF5Q15542 800 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 ALG11Q2TAA5 492 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 AMZ1Q400G9 498 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 MMEL1Q495T6 779 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 ATP13A5Q4VNC0 1218 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 RUNDC3AQ59EK9 446 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 SGO1Q5FBB7 561 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 PPP6R3Q5H9R7 873 aaPredicted RBP0.46□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms