RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 BTLAQ7Z6A9 289 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 DPPA2Q7Z7J5 298 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 RETREG3Q86VR2 466 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 JAZF1Q86VZ6 243 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 ZSWIM9Q86XI8 627 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 CHPFQ8IZ52 775 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 KIAA0895Q8NCT3 520 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 RBPMSQ93062 196 aaKnown RBP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 TBC1D20Q96BZ9 403 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 SLC47A1Q96FL8 570 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 LENG8Q96PV6 779 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 ABCG8Q9H221 673 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 MCUBQ9NWR8 336 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 ERAP1Q9NZ08 941 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 ZNF624Q9P2J8 865 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 TNS3Q68CZ2 1445 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 DIP2BQ9P265 1576 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 DHRS12A0PJE2 317 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 MEIOCA2RUB1 952 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 ARGFXA6NJG6 315 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 WDR64B1ANS9 1081 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 KRBOX1C9JBD0 128 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 NOL4O94818 638 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 GLAP06280 429 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 BPGMP07738 259 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 RALAP11233 206 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 ZNF26P17031 533 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 HIBADHP31937 336 aaKnown RBP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 YWHABP31946 246 aaKnown RBP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 EIF2DP41214 584 aaKnown RBP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 RAB13P51153 203 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 NAPAP54920 295 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 CCNA1P78396 465 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 TFAMQ00059 246 aaKnown RBP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 MLLT1Q03111 559 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 POU4F3Q15319 338 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 TEAD4Q15561 434 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 USF2Q15853 346 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 TRIQKQ629K1 86 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 RHBDF2Q6PJF5 856 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 CHSY3Q70JA7 882 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 WDSUB1Q8N9V3 476 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 SMG7Q92540 1137 aaKnown RBP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 UPF1Q92900 1129 aaKnown RBP eCLIP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 MYLPFQ96A32 169 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 BIRC7Q96CA5 298 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 ASB9Q96DX5 294 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 CENPNQ96H22 339 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 FBXL20Q96IG2 436 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 SLC9A7Q96T83 725 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 GINS4Q9BRT9 223 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 ILKAPQ9H0C8 392 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 DCSTAMPQ9H295 470 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 FBXO8Q9NRD0 319 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 MGAT4BQ9UQ53 548 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 PLLPQ9Y342 182 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 MN1Q10571 1320 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 EFCAB10A6NFE3 127 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 CCDC154A6NI56 674 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 EFCAB9A8MZ26 197 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 ZNF879B4DU55 563 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 NDUFA2O43678 99 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 NRP2O60462 931 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 PCSK2P16519 638 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 CBLP22681 906 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 DDX6P26196 483 aaKnown RBP eCLIP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 RPS5P46782 204 aaKnown RBP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 QARSP47897 775 aaKnown RBP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 RAB4BP61018 213 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 ERVK-25P63136 954 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 KHDRBS1Q07666 443 aaKnown RBP eCLIP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 SLC6A19Q695T7 634 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 CASC4Q6P4E1 433 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 SPATC1Q76KD6 591 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 TRIM48Q8IWZ4 208 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 LGI2Q8N0V4 545 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 EID3Q8N140 333 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 PCDH20Q8N6Y1 951 aaKnown RBP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 ERVK-6Q9BXR3 956 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 SLC19A3Q9BZV2 496 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 ZNF408Q9H9D4 720 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 NGRNQ9NPE2 291 aaKnown RBP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 ERVK-18Q9QC07 812 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 NUDT5Q9UKK9 219 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 PCDHAC2Q9Y5I4 1007 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 IQGAP3Q86VI3 1631 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 LRRIQ1Q96JM4 1722 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 TNKSO95271 1327 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 CTDSP2O14595 271 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 SEC14L2O76054 403 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 RASGRP1O95267 797 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 TSHRP16473 764 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 RFX1P22670 979 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 ASMTP46597 345 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 GNPDA1P46926 289 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 IL5RAQ01344 420 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 VEPH1Q14D04 833 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 NCF4Q15080 339 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 PIK3R6Q5UE93 754 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms