RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 PIWIL4Q7Z3Z4 852 aaKnown RBP10.62□□□□□ -0.71
CUX1-221ENST00000622516 BBS5Q8N3I7 341 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 TSPAN17Q96FV3 270 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 SMG9Q9H0W8 520 aaKnown RBP10.62□□□□□ -0.71
CUX1-221ENST00000622516 FBRSL1Q9HCM7 1045 aaKnown RBP10.62□□□□□ -0.71
CUX1-221ENST00000622516 FKBPLQ9UIM3 349 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 VPS28Q9UK41 221 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 LRRC42Q9Y546 428 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 CHD5Q8TDI0 1954 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 A0A1B0GTL3 188 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 ANKRD33BA6NCL7 494 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 IQCF5A8MTL0 148 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 SDHDO14521 159 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 TMCC1O94876 653 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 SOD2P04179 222 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 ANPEPP15144 967 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 CD1DP15813 335 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 POLD2P49005 469 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 CYP4F8P98187 520 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 TRAF2Q12933 501 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 PDAP1Q13442 181 aaKnown RBP10.62□□□□□ -0.71
CUX1-221ENST00000622516 BTG3Q14201 252 aaPredicted RBP10.62□□□□□ -0.71
CUX1-221ENST00000622516 GEN1Q17RS7 908 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 TRMT5Q32P41 509 aaKnown RBP10.62□□□□□ -0.71
CUX1-221ENST00000622516 GK5Q6ZS86 529 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 FAM156AQ8NDB6 213 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 MIEF2Q96C03 454 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 CCDC97Q96F63 343 aaPredicted RBP10.62□□□□□ -0.71
CUX1-221ENST00000622516 KCNA7Q96RP8 456 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 SLC30A3Q99726 388 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 KLF16Q9BXK1 252 aaPredicted RBP10.62□□□□□ -0.71
CUX1-221ENST00000622516 TDRD1Q9BXT4 1180 aaKnown RBP10.62□□□□□ -0.71
CUX1-221ENST00000622516 SARS2Q9NP81 518 aaKnown RBP10.62□□□□□ -0.71
CUX1-221ENST00000622516 TLR9Q9NR96 1032 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 POLR3BQ9NW08 1133 aaPredicted RBP10.62□□□□□ -0.71
CUX1-221ENST00000622516 CLEC4EQ9ULY5 219 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 POMPQ9Y244 141 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 PCDHB9Q9Y5E1 797 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 MICAL3Q7RTP6 2002 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 A0A1B0GVM2 712 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 TCAF2A6NFQ2 919 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 RHOBTB1O94844 696 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 EFEMP2O95967 443 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 RBP1P09455 135 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 ALPIP09923 528 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 CR2P20023 1033 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 PPARGP37231 505 aaPredicted RBP10.61□□□□□ -0.71
CUX1-221ENST00000622516 VHLP40337 213 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 CCNG1P51959 295 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 STC1P52823 247 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 CYLC2Q14093 348 aaPredicted RBP10.61□□□□□ -0.71
CUX1-221ENST00000622516 C5orf22Q49AR2 442 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 RNF111Q6ZNA4 994 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 TPGS1Q6ZTW0 290 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 REM2Q8IYK8 340 aaPredicted RBP10.61□□□□□ -0.71
CUX1-221ENST00000622516 PAF1Q8N7H5 531 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 PTGR2Q8N8N7 351 aaPredicted RBP10.61□□□□□ -0.71
CUX1-221ENST00000622516 TMA16Q96EY4 203 aaKnown RBP10.61□□□□□ -0.71
CUX1-221ENST00000622516 SLC45A3Q96JT2 553 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 CDRT15Q96T59 188 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 TMEM39AQ9NV64 488 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 BACE2Q9Y5Z0 518 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 RGSL1A5PLK6 1076 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 ANKRD66B4E2M5 251 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 C9JVG2 144 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 BNIP3LO60238 219 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 SRP72O76094 671 aaKnown RBP10.61□□□□□ -0.71
CUX1-221ENST00000622516 EPOP01588 193 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 ZNF37AP17032 561 aaPredicted RBP10.61□□□□□ -0.71
CUX1-221ENST00000622516 FOXA1P55317 472 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 CCNIQ14094 377 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 ZRANB3Q5FWF4 1079 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 METTL21CQ5VZV1 264 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 FAM45BPQ6NSW5 357 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 SDCCAG8Q86SQ7 713 aaPredicted RBP10.61□□□□□ -0.71
CUX1-221ENST00000622516 LCA5Q86VQ0 697 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 MYLK4Q86YV6 388 aaPredicted RBP10.61□□□□□ -0.71
CUX1-221ENST00000622516 RNF168Q8IYW5 571 aaPredicted RBP10.61□□□□□ -0.71
CUX1-221ENST00000622516 DSELQ8IZU8 1212 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 MAB21L3Q8N8X9 362 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 DCBLD1Q8N8Z6 715 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 PDZD8Q8NEN9 1154 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 OR9I1Q8NGQ6 314 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 GABPB2Q8TAK5 448 aaPredicted RBP10.61□□□□□ -0.71
CUX1-221ENST00000622516 FAM45AQ8TCE6 357 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 ACTRT2Q8TDY3 377 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 CNDP1Q96KN2 507 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 C3orf30Q96M34 536 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 GSTO2Q9H4Y5 243 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 CCDC167Q9P0B6 97 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 MED16Q9Y2X0 877 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 CPQQ9Y646 472 aa10.61□□□□□ -0.71
CUX1-221ENST00000622516 DNAH14Q0VDD8 3507 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 REV3LO60673 3130 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 ILVBLA1L0T0 632 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 CDC7O00311 574 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 SMAD6O43541 496 aaKnown RBP10.6□□□□□ -0.71
CUX1-221ENST00000622516 NPHS1O60500 1241 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 NIPSNAP2O75323 286 aa10.6□□□□□ -0.71
CUX1-221ENST00000622516 NDUFS3O75489 264 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 222.9 ms