RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 DTD2Q96FN9 168 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 SUDS3Q9H7L9 328 aaPredicted RBP13.48□□□□□ -0.25
LINC00540-202ENST00000616974 TCRBV7S3A2A0A539 114 aa13.47□□□□□ -0.25
LINC00540-202ENST00000616974 FADS2P1A8MWK0 482 aa13.47□□□□□ -0.25
LINC00540-202ENST00000616974 MTSS1O43312 755 aa13.47□□□□□ -0.25
LINC00540-202ENST00000616974 SH3BP5O60239 455 aa13.47□□□□□ -0.25
LINC00540-202ENST00000616974 GCATO75600 419 aa13.47□□□□□ -0.25
LINC00540-202ENST00000616974 NDST3O95803 873 aa13.47□□□□□ -0.25
LINC00540-202ENST00000616974 STC1P52823 247 aa13.47□□□□□ -0.25
LINC00540-202ENST00000616974 C21orf59P57076 290 aa13.47□□□□□ -0.25
LINC00540-202ENST00000616974 LMNB2Q03252 620 aa13.47□□□□□ -0.25
LINC00540-202ENST00000616974 ZNF648Q5T619 568 aaPredicted RBP13.47□□□□□ -0.25
LINC00540-202ENST00000616974 ALS2CLQ60I27 953 aa13.47□□□□□ -0.25
LINC00540-202ENST00000616974 RANBP10Q6VN20 620 aa13.47□□□□□ -0.25
LINC00540-202ENST00000616974 KYAT3Q6YP21 454 aaKnown RBP13.47□□□□□ -0.25
LINC00540-202ENST00000616974 CREG2Q8IUH2 290 aa13.47□□□□□ -0.25
LINC00540-202ENST00000616974 GPR26Q8NDV2 337 aa13.47□□□□□ -0.25
LINC00540-202ENST00000616974 BLOC1S5Q8TDH9 187 aa13.47□□□□□ -0.25
LINC00540-202ENST00000616974 TSACCQ96A04 125 aaPredicted RBP13.47□□□□□ -0.25
LINC00540-202ENST00000616974 NUS1Q96E22 293 aa13.47□□□□□ -0.25
LINC00540-202ENST00000616974 IFT43Q96FT9 208 aa13.47□□□□□ -0.25
LINC00540-202ENST00000616974 PDXPQ96GD0 296 aa13.47□□□□□ -0.25
LINC00540-202ENST00000616974 VAT1Q99536 393 aa13.47□□□□□ -0.25
LINC00540-202ENST00000616974 ELF4Q99607 663 aaPredicted RBP13.47□□□□□ -0.25
LINC00540-202ENST00000616974 ETNK1Q9HBU6 452 aa13.47□□□□□ -0.25
LINC00540-202ENST00000616974 TRHDEQ9UKU6 1024 aa13.47□□□□□ -0.25
LINC00540-202ENST00000616974 ZNF711Q9Y462 761 aa13.47□□□□□ -0.25
LINC00540-202ENST00000616974 ARL5AQ9Y689 179 aa13.47□□□□□ -0.25
LINC00540-202ENST00000616974 EPG5Q9HCE0 2579 aa13.47□□□□□ -0.25
LINC00540-202ENST00000616974 ANKRD11Q6UB99 2663 aaPredicted RBP13.47□□□□□ -0.25
LINC00540-202ENST00000616974 LOC400499M0QZD8 3231 aa13.47□□□□□ -0.25
LINC00540-202ENST00000616974 A6NNZ2 444 aa13.46□□□□□ -0.25
LINC00540-202ENST00000616974 FPGTO14772 594 aa13.46□□□□□ -0.25
LINC00540-202ENST00000616974 CES1P23141 567 aa13.46□□□□□ -0.25
LINC00540-202ENST00000616974 RPL22P35268 128 aaKnown RBP13.46□□□□□ -0.25
LINC00540-202ENST00000616974 POLD2P49005 469 aa13.46□□□□□ -0.25
LINC00540-202ENST00000616974 ATXN3P54252 364 aaPredicted RBP13.46□□□□□ -0.25
LINC00540-202ENST00000616974 ARHGEF7Q14155 803 aa13.46□□□□□ -0.25
LINC00540-202ENST00000616974 CCNG2Q16589 344 aa13.46□□□□□ -0.25
LINC00540-202ENST00000616974 ARHGEF18Q6ZSZ5 1173 aa13.46□□□□□ -0.25
LINC00540-202ENST00000616974 LYSMD1Q96S90 227 aa13.46□□□□□ -0.25
LINC00540-202ENST00000616974 RIOK2Q9BVS4 552 aaKnown RBP13.46□□□□□ -0.25
LINC00540-202ENST00000616974 TM7SF3Q9NS93 570 aa13.46□□□□□ -0.25
LINC00540-202ENST00000616974 TTC7AQ9ULT0 858 aaPredicted RBP13.46□□□□□ -0.25
LINC00540-202ENST00000616974 ST14Q9Y5Y6 855 aa13.46□□□□□ -0.25
LINC00540-202ENST00000616974 SPTY2D1-AS1A0A0U1RR47 76 aa13.46□□□□□ -0.26
LINC00540-202ENST00000616974 PRR5-ARHGAP8B1AHC4 643 aa13.46□□□□□ -0.26
LINC00540-202ENST00000616974 INPP4BO15327 924 aa13.46□□□□□ -0.26
LINC00540-202ENST00000616974 OPHN1O60890 802 aa13.46□□□□□ -0.26
LINC00540-202ENST00000616974 KCNA4P22459 653 aa13.46□□□□□ -0.26
LINC00540-202ENST00000616974 C1orf61Q13536 156 aa13.46□□□□□ -0.26
LINC00540-202ENST00000616974 SYT10Q6XYQ8 523 aa13.46□□□□□ -0.26
LINC00540-202ENST00000616974 SLC25A45Q8N413 288 aa13.46□□□□□ -0.26
LINC00540-202ENST00000616974 TTC30BQ8N4P2 665 aa13.46□□□□□ -0.26
LINC00540-202ENST00000616974 DEFB124Q8NES8 71 aa13.46□□□□□ -0.26
LINC00540-202ENST00000616974 C16orf45Q96MC5 204 aaPredicted RBP13.46□□□□□ -0.26
LINC00540-202ENST00000616974 FSD1LQ9BXM9 530 aa13.46□□□□□ -0.26
LINC00540-202ENST00000616974 DDX47Q9H0S4 455 aaKnown RBP13.46□□□□□ -0.26
LINC00540-202ENST00000616974 FGF22Q9HCT0 170 aa13.46□□□□□ -0.26
LINC00540-202ENST00000616974 HS3ST3A1Q9Y663 406 aa13.46□□□□□ -0.26
LINC00540-202ENST00000616974 A0A1B0GTQ1 180 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 ITGAVP06756 1048 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 CYP2A6P11509 494 aaPredicted RBP13.45□□□□□ -0.26
LINC00540-202ENST00000616974 BPIP17213 487 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 SUOXP51687 545 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 MPP3Q13368 585 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 AGERQ15109 404 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 TEAD4Q15561 434 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 ZNF423Q2M1K9 1284 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 PAPD7Q5XG87 772 aaKnown RBP13.45□□□□□ -0.26
LINC00540-202ENST00000616974 PNCKQ6P2M8 343 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 RD3Q7Z3Z2 195 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 HEATR4Q86WZ0 1026 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 APOOQ9BUR5 198 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 ZFYVE1Q9HBF4 777 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 GDF3Q9NR23 364 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 DNAAF2Q9NVR5 837 aaKnown RBP13.45□□□□□ -0.26
LINC00540-202ENST00000616974 DNAJC28Q9NX36 388 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 DLL3Q9NYJ7 618 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 TMPRSS11EQ9UL52 423 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 OAS3Q9Y6K5 1087 aaKnown RBP13.45□□□□□ -0.26
LINC00540-202ENST00000616974 PGRMC1O00264 195 aaKnown RBP13.45□□□□□ -0.26
LINC00540-202ENST00000616974 GAPDHSO14556 408 aaPredicted RBP13.45□□□□□ -0.26
LINC00540-202ENST00000616974 SYPP08247 313 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 PRSS56P0CW18 603 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 GIMD1P0DJR0 217 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 SPINT3P49223 89 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 KHDC1Q4VXA5 237 aaKnown RBP13.45□□□□□ -0.26
LINC00540-202ENST00000616974 CCDC38Q502W7 563 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 RAET1GQ6H3X3 334 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 ESRP1Q6NXG1 681 aaKnown RBP13.45□□□□□ -0.26
LINC00540-202ENST00000616974 KANSL1Q7Z3B3 1105 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 TMC3Q7Z5M5 1100 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 KLHDC8BQ8IXV7 354 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 DENND6BQ8NEG7 585 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 OR52K1Q8NGK4 314 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 CCL4L1Q8NHW4 92 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 SAP25Q8TEE9 199 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 ASB12Q8WXK4 309 aa13.45□□□□□ -0.26
LINC00540-202ENST00000616974 AP2M1Q96CW1 435 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms