RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 IMPACTQ9P2X3 320 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 CNOT6Q9ULM6 557 aaKnown RBP5.69□□□□□ -1.5
CPNE3-208ENST00000614678 PPP2R2CQ9Y2T4 447 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 ARL5AQ9Y689 179 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 ANKRD66B4E2M5 251 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 TAF4O00268 1085 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 KCNN4O15554 427 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 UGT1A9O60656 530 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 RBP3P10745 1247 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 CEACAM1P13688 526 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 UGT1A6P19224 532 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 UGT1A1P22309 533 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 UGT1A4P22310 534 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 PMLP29590 882 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 UGT1A3P35503 534 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 UGT1A5P35504 534 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 CCT8P50990 548 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 TMPRSS15P98073 1019 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 RAD51Q06609 339 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 SIX1Q15475 284 aaPredicted RBP5.69□□□□□ -1.5
CPNE3-208ENST00000614678 PLA2G4EQ3MJ16 856 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 ALG1LQ6GMV1 187 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 KIAA1161Q6NSJ0 714 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 PNCKQ6P2M8 343 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 BRAT1Q6PJG6 821 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 KDELC1Q6UW63 502 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 BBS12Q6ZW61 710 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 TECPR1Q7Z6L1 1165 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 REXO1L1PQ8IX06 675 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 EXD1Q8NHP7 514 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 TFB1MQ8WVM0 346 aaKnown RBP5.69□□□□□ -1.5
CPNE3-208ENST00000614678 TEKT5Q96M29 485 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 KDM4CQ9H3R0 1056 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 UGT1A7Q9HAW7 530 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 UGT1A10Q9HAW8 530 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 UGT1A8Q9HAW9 530 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 GLOD4Q9HC38 313 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 PCDHB1Q9Y5F3 818 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 SPTBP11277 2137 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 GOLGA6L3A6NEY3 463 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 A6NNZ2 444 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 FPGTO14772 594 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 CER1O95813 267 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 TGM2P21980 687 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 EIF3EP60228 445 aaKnown RBP5.69□□□□□ -1.5
CPNE3-208ENST00000614678 AP1S1P61966 158 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 IFI35P80217 286 aaPredicted RBP5.69□□□□□ -1.5
CPNE3-208ENST00000614678 TEAD4Q15561 434 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 ODF2Q5BJF6 829 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 SIRPB2Q5JXA9 342 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 NRROSQ86YC3 692 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 HTR3CQ8WXA8 447 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 LRIG1Q96JA1 1093 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 CNDP2Q96KP4 475 aaKnown RBP5.69□□□□□ -1.5
CPNE3-208ENST00000614678 APOLD1Q96LR9 279 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 ZNF599Q96NL3 588 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 MCCC1Q96RQ3 725 aaPredicted RBP5.69□□□□□ -1.5
CPNE3-208ENST00000614678 SPATS2LQ9NUQ6 558 aaKnown RBP5.69□□□□□ -1.5
CPNE3-208ENST00000614678 CPED1A4D0V7 1026 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 RASGRP1O95267 797 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 CSF2P04141 144 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 CEACAM5P06731 702 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 MPSTP25325 297 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 CSNK1DP48730 415 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 EPHB1P54762 984 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 WNT3AP56704 352 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 RFTN1Q14699 578 aaPredicted RBP5.69□□□□□ -1.5
CPNE3-208ENST00000614678 TRIP13Q15645 432 aaPredicted RBP5.69□□□□□ -1.5
CPNE3-208ENST00000614678 CCDC38Q502W7 563 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 RAET1GQ6H3X3 334 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 KYAT3Q6YP21 454 aaKnown RBP5.69□□□□□ -1.5
CPNE3-208ENST00000614678 SLC35F3Q8IY50 421 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 RCOR2Q8IZ40 523 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 COG1Q8WTW3 980 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 CASKIN2Q8WXE0 1202 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 TADA1Q96BN2 335 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 NUS1Q96E22 293 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 ZNF778Q96MU6 729 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 TUBGCP5Q96RT8 1024 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 FAM96AQ9H5X1 160 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 KLHL8Q9P2G9 620 aaPredicted RBP5.69□□□□□ -1.5
CPNE3-208ENST00000614678 APOBEC3BQ9UH17 382 aaKnown RBP5.69□□□□□ -1.5
CPNE3-208ENST00000614678 AMFRQ9UKV5 643 aa5.69□□□□□ -1.5
CPNE3-208ENST00000614678 GAPDHSO14556 408 aaPredicted RBP5.68□□□□□ -1.5
CPNE3-208ENST00000614678 KRT37O76014 449 aa5.68□□□□□ -1.5
CPNE3-208ENST00000614678 CTNNA2P26232 953 aa5.68□□□□□ -1.5
CPNE3-208ENST00000614678 RWDD2BP57060 319 aa5.68□□□□□ -1.5
CPNE3-208ENST00000614678 CCDC181Q5TID7 509 aa5.68□□□□□ -1.5
CPNE3-208ENST00000614678 ERAP2Q6P179 960 aa5.68□□□□□ -1.5
CPNE3-208ENST00000614678 SLC30A9Q6PML9 568 aa5.68□□□□□ -1.5
CPNE3-208ENST00000614678 PHACTR4Q8IZ21 702 aa5.68□□□□□ -1.5
CPNE3-208ENST00000614678 LILRA3Q8N6C8 439 aaPredicted RBP5.68□□□□□ -1.5
CPNE3-208ENST00000614678 BLOC1S5Q8TDH9 187 aa5.68□□□□□ -1.5
CPNE3-208ENST00000614678 DTD2Q96FN9 168 aa5.68□□□□□ -1.5
CPNE3-208ENST00000614678 QKIQ96PU8 341 aaKnown RBP eCLIP5.68□□□□□ -1.5
CPNE3-208ENST00000614678 FOXP3Q9BZS1 431 aa5.68□□□□□ -1.5
CPNE3-208ENST00000614678 PCED1AQ9H1Q7 454 aa5.68□□□□□ -1.5
CPNE3-208ENST00000614678 RETREG1Q9H6L5 497 aa5.68□□□□□ -1.5
CPNE3-208ENST00000614678 RDH14Q9HBH5 336 aa5.68□□□□□ -1.5
CPNE3-208ENST00000614678 DDX56Q9NY93 547 aaKnown RBP5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms