RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 MSS51Q4VC12 460 aa9.49□□□□□ -0.89
TRIM28-208ENST00000597172 LRRC8BQ6P9F7 803 aa9.49□□□□□ -0.89
TRIM28-208ENST00000597172 SERPINA13PQ6UXR4 307 aa9.49□□□□□ -0.89
TRIM28-208ENST00000597172 GSPT2Q8IYD1 628 aaKnown RBP9.49□□□□□ -0.89
TRIM28-208ENST00000597172 STK40Q8N2I9 435 aa9.49□□□□□ -0.89
TRIM28-208ENST00000597172 AGGF1Q8N302 714 aaeCLIP9.49□□□□□ -0.89
TRIM28-208ENST00000597172 ZCCHC9Q8N567 271 aaKnown RBP9.49□□□□□ -0.89
TRIM28-208ENST00000597172 FRMD1Q8N878 549 aa9.49□□□□□ -0.89
TRIM28-208ENST00000597172 MDGA1Q8NFP4 955 aa9.49□□□□□ -0.89
TRIM28-208ENST00000597172 IPMKQ8NFU5 416 aa9.49□□□□□ -0.89
TRIM28-208ENST00000597172 GDAP1L1Q96MZ0 367 aa9.49□□□□□ -0.89
TRIM28-208ENST00000597172 SERPINB12Q96P63 405 aa9.49□□□□□ -0.89
TRIM28-208ENST00000597172 PPP1R2P1Q96PQ5 205 aa9.49□□□□□ -0.89
TRIM28-208ENST00000597172 GABRG3Q99928 467 aa9.49□□□□□ -0.89
TRIM28-208ENST00000597172 TBL1YQ9BQ87 522 aa9.49□□□□□ -0.89
TRIM28-208ENST00000597172 APOL2Q9BQE5 337 aa9.49□□□□□ -0.89
TRIM28-208ENST00000597172 HEPHQ9BQS7 1158 aa9.49□□□□□ -0.89
TRIM28-208ENST00000597172 FICDQ9BVA6 458 aa9.49□□□□□ -0.89
TRIM28-208ENST00000597172 LRRC40Q9H9A6 602 aa9.49□□□□□ -0.89
TRIM28-208ENST00000597172 CASS4Q9NQ75 786 aa9.49□□□□□ -0.89
TRIM28-208ENST00000597172 PRSS16Q9NQE7 514 aa9.49□□□□□ -0.89
TRIM28-208ENST00000597172 HAUS2Q9NVX0 235 aa9.49□□□□□ -0.89
TRIM28-208ENST00000597172 SUN2Q9UH99 717 aa9.49□□□□□ -0.89
TRIM28-208ENST00000597172 SARDHQ9UL12 918 aa9.49□□□□□ -0.89
TRIM28-208ENST00000597172 SHOC2Q9UQ13 582 aa9.49□□□□□ -0.89
TRIM28-208ENST00000597172 CHKBQ9Y259 395 aa9.49□□□□□ -0.89
TRIM28-208ENST00000597172 WASF2Q9Y6W5 498 aa9.49□□□□□ -0.89
TRIM28-208ENST00000597172 RP1L1Q8IWN7 2480 aaPredicted RBP9.49□□□□□ -0.89
TRIM28-208ENST00000597172 CEP192Q8TEP8 1941 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 MYO18AQ92614 2054 aaKnown RBP9.48□□□□□ -0.89
TRIM28-208ENST00000597172 UQCRHLA0A096LP55 91 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.48□□□□□ -0.89
TRIM28-208ENST00000597172 SMAPO00193 183 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 BANF1O75531 89 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 LEFTY1O75610 366 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 PIGNO95427 931 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 KLF8O95600 359 aaPredicted RBP9.48□□□□□ -0.89
TRIM28-208ENST00000597172 EPOP01588 193 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 EPHX1P07099 455 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 TUBBP07437 444 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 UQCRHP07919 91 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 TPH1P17752 444 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 NTSR1P30989 418 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 MAGEA3P43357 314 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 CHRNA4P43681 627 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 LMAN1P49257 510 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 MRPS21P82921 87 aaKnown RBP9.48□□□□□ -0.89
TRIM28-208ENST00000597172 CDK18Q07002 472 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 MTM1Q13496 603 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 UBAP2LQ14157 1087 aaKnown RBP9.48□□□□□ -0.89
TRIM28-208ENST00000597172 HLTFQ14527 1009 aaKnown RBP eCLIP9.48□□□□□ -0.89
TRIM28-208ENST00000597172 SLC1A5Q15758 541 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 SMAD1Q15797 465 aaKnown RBP9.48□□□□□ -0.89
TRIM28-208ENST00000597172 ARSIQ5FYB1 569 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 SIRPB2Q5JXA9 342 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 ZSWIM9Q86XI8 627 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 CHPFQ8IZ52 775 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 RYBPQ8N488 228 aaPredicted RBP9.48□□□□□ -0.89
TRIM28-208ENST00000597172 SLC25A41Q8N5S1 370 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 OR52K1Q8NGK4 314 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 SNIP1Q8TAD8 396 aaKnown RBP9.48□□□□□ -0.89
TRIM28-208ENST00000597172 PIH1D2Q8WWB5 315 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 ERLEC1Q96DZ1 483 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 FEM1CQ96JP0 617 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 SIGLEC10Q96LC7 697 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 SMIM14Q96QK8 99 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 TUBGCP5Q96RT8 1024 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 CDC6Q99741 560 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 TDRD1Q9BXT4 1180 aaKnown RBP9.48□□□□□ -0.89
TRIM28-208ENST00000597172 FAM129AQ9BZQ8 928 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 SUV39H2Q9H5I1 410 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 ZDHHC6Q9H6R6 413 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 ARNT2Q9HBZ2 717 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 CD248Q9HCU0 757 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 PIH1D1Q9NWS0 290 aaKnown RBP9.48□□□□□ -0.89
TRIM28-208ENST00000597172 PPM1HQ9ULR3 514 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 HEMK1Q9Y5R4 338 aaPredicted RBP9.48□□□□□ -0.89
TRIM28-208ENST00000597172 AK5Q9Y6K8 562 aa9.48□□□□□ -0.89
TRIM28-208ENST00000597172 A0A1W2PQF6 199 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 GOLGA6CA6NDK9 693 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 GOLGA6BA6NDN3 693 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 E7ESA3 106 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 NDC80O14777 642 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 PPFIA2O75334 1257 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 ALDH1A2O94788 518 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 PGLSO95336 258 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 NDST3O95803 873 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 GOLGA6DP0CG33 693 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 MLNP12872 115 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 SLC8A1P32418 973 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 RECQLP46063 649 aaPredicted RBP9.47□□□□□ -0.89
TRIM28-208ENST00000597172 METAP1P53582 386 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 RAD51Q06609 339 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 BCL2L1Q07817 233 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 DHX9Q08211 1270 aaKnown RBP9.47□□□□□ -0.89
TRIM28-208ENST00000597172 CAMK2GQ13555 558 aaPredicted RBP9.47□□□□□ -0.89
TRIM28-208ENST00000597172 GALNT3Q14435 633 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 PTPRRQ15256 657 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 E2F5Q15329 346 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 CERCAMQ5T4B2 595 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms