RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 THOP1P52888 689 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 DNAJC3Q13217 504 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 KCTD19Q17RG1 926 aaPredicted RBP11.13□□□□□ -0.63
VRK3-210ENST00000596121 PROX2Q3B8N5 592 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 SIRPB2Q5JXA9 342 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 ANKRD20A2Q5SQ80 823 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 ANKRD20A1Q5TYW2 823 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 ANKRD20A3Q5VUR7 823 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 MACC1Q6ZN28 852 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 LYSMD3Q7Z3D4 306 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 PRUNE1Q86TP1 453 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 PHACTR4Q8IZ21 702 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 SLC25A41Q8N5S1 370 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 FAM71DQ8N9W8 422 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 ZNF548Q8NEK5 533 aaPredicted RBP11.13□□□□□ -0.63
VRK3-210ENST00000596121 C1orf54Q8WWF1 131 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 OR1E3Q8WZA6 343 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 PDXPQ96GD0 296 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 VAT1Q99536 393 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 LRRC61Q9BV99 259 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 RIOK2Q9BVS4 552 aaKnown RBP11.13□□□□□ -0.63
VRK3-210ENST00000596121 TEX101Q9BY14 249 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 ADGRE3Q9BY15 652 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 GBA3Q9H227 469 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 FGF22Q9HCT0 170 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 HAUS2Q9NVX0 235 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 RSPH14Q9UHP6 348 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 TRHDEQ9UKU6 1024 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 CNOT6Q9ULM6 557 aaKnown RBP11.13□□□□□ -0.63
VRK3-210ENST00000596121 SHOC2Q9UQ13 582 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 U3KQA8 63 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 CEP295Q9C0D2 2601 aa11.13□□□□□ -0.63
VRK3-210ENST00000596121 C1orf232A0A0U1RR37 186 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 C5orf60A6NFR6 353 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 TOR1BO14657 336 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 METTL18O95568 372 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 CEACAM5P06731 702 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 HOXC4P09017 264 aaPredicted RBP11.12□□□□□ -0.63
VRK3-210ENST00000596121 ZNF30P17039 623 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 CA4P22748 312 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 CXCR5P32302 372 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 ADRA1AP35348 466 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 POLD2P49005 469 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 SPINT3P49223 89 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 KIAA1024LP59773 190 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 SRP54P61011 504 aaKnown RBP11.12□□□□□ -0.63
VRK3-210ENST00000596121 DPTQ07507 201 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 MSLNQ13421 630 aaPredicted RBP11.12□□□□□ -0.63
VRK3-210ENST00000596121 PTK2BQ14289 1009 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 TCEA2Q15560 299 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 OASLQ15646 514 aaKnown RBP11.12□□□□□ -0.63
VRK3-210ENST00000596121 ENPP7Q6UWV6 458 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 RD3Q7Z3Z2 195 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 TMC3Q7Z5M5 1100 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 HEATR4Q86WZ0 1026 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 HID1Q8IV36 788 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 NDUFAF2Q8N183 169 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 IPMKQ8NFU5 416 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 LMX1AQ8TE12 382 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 AP2M1Q96CW1 435 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 CNDP2Q96KP4 475 aaKnown RBP11.12□□□□□ -0.63
VRK3-210ENST00000596121 WDR92Q96MX6 357 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 SPATA13Q96N96 652 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 CDC6Q99741 560 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 TMEM121Q9BTD3 319 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 CARD9Q9H257 536 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 MAGEE1Q9HCI5 957 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 ZNF711Q9Y462 761 aa11.12□□□□□ -0.63
VRK3-210ENST00000596121 GOLGA4Q13439 2230 aaKnown RBP11.12□□□□□ -0.63
VRK3-210ENST00000596121 FADS2P1A8MWK0 482 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 ENC1O14682 589 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 AQP9O43315 295 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 TNFSF14O43557 240 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 LIASO43766 372 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 LDOC1O95751 146 aaPredicted RBP11.11□□□□□ -0.63
VRK3-210ENST00000596121 EPOP01588 193 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 TSHRP16473 764 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 NFKBIAP25963 317 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 TEAD1P28347 426 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 CA5AP35218 305 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 HK3P52790 923 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 CLDN6P56747 220 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 HNRNPKP61978 463 aaKnown RBP eCLIP11.11□□□□□ -0.63
VRK3-210ENST00000596121 CDK3Q00526 305 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 PPARDQ03181 441 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 FOXC1Q12948 553 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 MPP3Q13368 585 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 SPARCL1Q14515 664 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 PTPRCAPQ14761 206 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 SLC1A5Q15758 541 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 DEFB133Q30KQ1 61 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 PRRT3Q5FWE3 981 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 FAXCQ5TGI0 409 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 RAET1GQ6H3X3 334 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 DENND5AQ6IQ26 1287 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 ADAMTSL4Q6UY14 1074 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 RANBP10Q6VN20 620 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 MICALCLQ6ZW33 695 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 ZNF765Q7L2R6 523 aa11.11□□□□□ -0.63
VRK3-210ENST00000596121 TRIM74Q86UV6 250 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms