RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 SP5Q6BEB4 398 aaPredicted RBP4.2□□□□□ -1.74
LIG3-211ENST00000588713 ACAD10Q6JQN1 1059 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 ZNF280DQ6N043 979 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 RINT1Q6NUQ1 792 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 DHRS4L2Q6PKH6 230 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 UGT2A3Q6UWM9 527 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 RAPH1Q70E73 1250 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 Q71RC1 249 aaPredicted RBP4.2□□□□□ -1.74
LIG3-211ENST00000588713 KANSL1Q7Z3B3 1105 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 TRMT11Q7Z4G4 463 aaKnown RBP4.2□□□□□ -1.74
LIG3-211ENST00000588713 GDF7Q7Z4P5 450 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 FAM124AQ86V42 546 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 PRIMA1Q86XR5 153 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 CROCCP3Q8IVE0 287 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 ARHGEF19Q8IW93 802 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 SCUBE1Q8IWY4 988 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 AHI1Q8N157 1196 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 ZNF276Q8N554 614 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 BANPQ8N9N5 519 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 TEX19Q8NA77 164 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 C3orf58Q8NDZ4 430 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 C1orf216Q8TAB5 229 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 DTX3LQ8TDB6 740 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 SAP25Q8TEE9 199 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 DDI1Q8WTU0 396 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 WDR60Q8WVS4 1066 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 C1orf54Q8WWF1 131 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 ATG4AQ8WYN0 398 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 LENG9Q96B70 501 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 HAUS1Q96CS2 278 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 MTBPQ96DY7 904 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 DYDC2Q96IM9 177 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 MPP4Q96JB8 637 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 MRGPRX1Q96LB2 322 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 C9orf72Q96LT7 481 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 HEXIM2Q96MH2 286 aaKnown RBP4.2□□□□□ -1.74
LIG3-211ENST00000588713 C5orf34Q96MH7 638 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 BIRC8Q96P09 236 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 PANX3Q96QZ0 392 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 FIZ1Q96SL8 496 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 PCDHB18PQ96TA0 734 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 PAFAH2Q99487 392 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 STRA6Q9BX79 667 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 KLHL4Q9C0H6 718 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 NMUR2Q9GZQ4 415 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 ABCG4Q9H172 646 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 CXCL16Q9H2A7 254 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 LINC00597Q9H2U6 94 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 CRISPLD1Q9H336 500 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 TMEM206Q9H813 350 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 MANSC1Q9H8J5 431 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 PSTPIP2Q9H939 334 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 VPS37BQ9H9H4 285 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 USP29Q9HBJ7 922 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 S100A14Q9HCY8 104 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 TM9SF3Q9HD45 589 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 LATS2Q9NRM7 1088 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 WSB2Q9NYS7 404 aaPredicted RBP4.2□□□□□ -1.74
LIG3-211ENST00000588713 C6orf203Q9P0P8 240 aaPredicted RBP4.2□□□□□ -1.74
LIG3-211ENST00000588713 CNTN3Q9P232 1028 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 HEY2Q9UBP5 337 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 KCND3Q9UK17 655 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 STRIP2Q9ULQ0 834 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 SOX13Q9UN79 622 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 EXOC7Q9UPT5 735 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 SCINQ9Y6U3 715 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 TBC1D3BA6NDS4 549 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 FOXO6A8MYZ6 492 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 POC1B-GALNT4F8VUJ3 575 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 H3BNX3 289 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 K7ENM7 598 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 MEIS1O00470 390 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 PTGESO14684 152 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 SCAMP3O14828 347 aaKnown RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 ALOX15BO15296 676 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 PAPSS1O43252 624 aaPredicted RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 DENRO43583 198 aaKnown RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 FAM189A1O60320 539 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 NOBOXO60393 691 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 TNFAIP8O95379 198 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 WNT1P04628 370 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 SERPINA6P08185 405 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 CYP3A4P08684 503 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 FAM163BP0C2L3 166 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 ZCCHC18P0CG32 403 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 MYL2P10916 166 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 RALAP11233 206 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 HARSP12081 509 aaKnown RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 ETS2P15036 469 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 KRT4P19013 534 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 ACP1P24666 158 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 ACAT1P24752 427 aaKnown RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 PRDX6P30041 224 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 GTF2H1P32780 548 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 CYP2J2P51589 502 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 VAMP7P51809 220 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 ARL4CP56559 192 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 BPIFB4P59827 614 aa4.19□□□□□ -1.74
LIG3-211ENST00000588713 NOP14P78316 857 aaKnown RBP4.19□□□□□ -1.74
LIG3-211ENST00000588713 GCNT1Q02742 428 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms