RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 YTHDC1Q96MU7 727 aaKnown RBP5.93□□□□□ -1.46
VPS53-219ENST00000576019 RUNDC3BQ96NL0 473 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 MAP7D2Q96T17 732 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 GAD1Q99259 594 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 NEU1Q99519 415 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 ZSWIM1Q9BR11 485 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 DPCDQ9BVM2 203 aaPredicted RBP5.93□□□□□ -1.46
VPS53-219ENST00000576019 NPLQ9BXD5 320 aaPredicted RBP5.93□□□□□ -1.46
VPS53-219ENST00000576019 COA1Q9GZY4 146 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 SNTG1Q9NSN8 517 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 SIRT5Q9NXA8 310 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 WSB2Q9NYS7 404 aaPredicted RBP5.93□□□□□ -1.46
VPS53-219ENST00000576019 UBA2Q9UBT2 640 aaPredicted RBP5.93□□□□□ -1.46
VPS53-219ENST00000576019 MTMR6Q9Y217 621 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 XDHP47989 1333 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 MROH7Q68CQ1 1323 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 NAV3Q8IVL0 2385 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 CDK5RAP2Q96SN8 1893 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 A0A1B0GTL3 188 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 KRT87PA6NCN2 255 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 CDRT15L2A8MXV6 281 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 TCP10L2B9ZVM9 353 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 HRKO00198 91 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 MPHOSPH10O00566 681 aaKnown RBP5.92□□□□□ -1.46
VPS53-219ENST00000576019 FFAR3O14843 346 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 WDR46O15213 610 aaKnown RBP5.92□□□□□ -1.46
VPS53-219ENST00000576019 GPR42O15529 346 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 PROM1O43490 865 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 KAT7O95251 611 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 GUCA1CO95843 209 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 CHRM4P08173 479 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 PDHA1P08559 390 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 SUPT20HL2P0C7V6 817 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 AOC1P19801 751 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 FMO4P31512 558 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 MC5RP33032 325 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 CYP2C18P33260 490 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 MTHFRP42898 656 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 RPS6KA3P51812 740 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 HSD11B2P80365 405 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 B4GALNT1Q00973 533 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 DLX2Q07687 328 aaPredicted RBP5.92□□□□□ -1.46
VPS53-219ENST00000576019 PTK6Q13882 451 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 IL11RAQ14626 422 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 CCDC6Q16204 474 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 CD300EQ496F6 205 aaPredicted RBP5.92□□□□□ -1.46
VPS53-219ENST00000576019 FBXO43Q4G163 708 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 IGSF11Q5DX21 431 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 TCEAL5Q5H9L2 206 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 NHSL2Q5HYW2 709 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 ACSM6Q6P461 480 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 C19orf48Q6RUI8 117 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 TMPRSS9Q7Z410 1059 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 RNF144BQ7Z419 303 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 SYT12Q8IV01 421 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 FAM185AQ8N0U4 392 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 SHCBP1Q8NEM2 672 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 HSPH1Q92598 858 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 MMABQ96EY8 250 aaPredicted RBP5.92□□□□□ -1.46
VPS53-219ENST00000576019 ELMOD3Q96FG2 381 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 DACH2Q96NX9 599 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 TSGA13Q96PP4 275 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 NPAS1Q99742 590 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 ZNF341Q9BYN7 854 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 TRIM31Q9BZY9 425 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 TMEM168Q9H0V1 697 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 AGO3Q9H9G7 860 aaKnown RBP5.92□□□□□ -1.46
VPS53-219ENST00000576019 SAP30LQ9HAJ7 183 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 CACNG4Q9UBN1 327 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 TUBE1Q9UJT0 475 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 VPS4AQ9UN37 437 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 ZDHHC9Q9Y397 364 aa5.92□□□□□ -1.46
VPS53-219ENST00000576019 QSOX1O00391 747 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 ZBTB14O43829 449 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 ERN1O75460 977 aaKnown RBP5.91□□□□□ -1.46
VPS53-219ENST00000576019 TPPPO94811 219 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 SLCO2B1O94956 709 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 IPO7O95373 1038 aaKnown RBP5.91□□□□□ -1.46
VPS53-219ENST00000576019 PLA2G1BP04054 148 aaKnown RBP5.91□□□□□ -1.46
VPS53-219ENST00000576019 CYP1A1P04798 512 aaPredicted RBP5.91□□□□□ -1.46
VPS53-219ENST00000576019 DLDP09622 509 aaKnown RBP5.91□□□□□ -1.46
VPS53-219ENST00000576019 KRT10P13645 584 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 GNAT2P19087 354 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 MMP8P22894 467 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 GLDCP23378 1020 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 IGHMBP2P38935 993 aaKnown RBP5.91□□□□□ -1.46
VPS53-219ENST00000576019 CAMPP49913 170 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 ANXA11P50995 505 aaKnown RBP5.91□□□□□ -1.46
VPS53-219ENST00000576019 F2RL1P55085 397 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 UBASH3AP57075 661 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 IKQ13123 557 aaPredicted RBP5.91□□□□□ -1.46
VPS53-219ENST00000576019 BAATQ14032 418 aaPredicted RBP5.91□□□□□ -1.46
VPS53-219ENST00000576019 RRP1BQ14684 758 aaKnown RBP5.91□□□□□ -1.46
VPS53-219ENST00000576019 ZSCAN23Q3MJ62 389 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 TREML2Q5T2D2 321 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 WDR73Q6P4I2 378 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 GJB7Q6PEY0 223 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 DPY19L3Q6ZPD9 716 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 PARS2Q7L3T8 475 aaKnown RBP5.91□□□□□ -1.46
VPS53-219ENST00000576019 GPR142Q7Z601 462 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms