RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 IL17CQ9P0M4 197 aa17.06■□□□□ 0.32
NUP88-210ENST00000574867 DMGDHQ9UI17 866 aaKnown RBP17.06■□□□□ 0.32
NUP88-210ENST00000574867 ARL5AQ9Y689 179 aa17.06■□□□□ 0.32
NUP88-210ENST00000574867 PRAMEF26H0Y7S4 382 aa17.06■□□□□ 0.32
NUP88-210ENST00000574867 STX7O15400 261 aaKnown RBP17.06■□□□□ 0.32
NUP88-210ENST00000574867 LDB2O43679 373 aa17.06■□□□□ 0.32
NUP88-210ENST00000574867 PAK4O96013 591 aaPredicted RBP17.06■□□□□ 0.32
NUP88-210ENST00000574867 ZNF140P52738 457 aaPredicted RBP17.06■□□□□ 0.32
NUP88-210ENST00000574867 LRRC14Q15048 493 aa17.06■□□□□ 0.32
NUP88-210ENST00000574867 DNAJC21Q5F1R6 531 aaKnown RBP17.06■□□□□ 0.32
NUP88-210ENST00000574867 PCID2Q5JVF3 399 aa17.06■□□□□ 0.32
NUP88-210ENST00000574867 TEX35Q5T0J7 233 aa17.06■□□□□ 0.32
NUP88-210ENST00000574867 Q6ZVL8 140 aa17.06■□□□□ 0.32
NUP88-210ENST00000574867 ARMCX6Q7L4S7 300 aa17.06■□□□□ 0.32
NUP88-210ENST00000574867 ATOH1Q92858 354 aaPredicted RBP17.06■□□□□ 0.32
NUP88-210ENST00000574867 KLK6Q92876 244 aa17.06■□□□□ 0.32
NUP88-210ENST00000574867 PEX13Q92968 403 aa17.06■□□□□ 0.32
NUP88-210ENST00000574867 ART4Q93070 314 aa17.06■□□□□ 0.32
NUP88-210ENST00000574867 LOXL4Q96JB6 756 aa17.06■□□□□ 0.32
NUP88-210ENST00000574867 PLEKHG4BQ96PX9 1271 aa17.06■□□□□ 0.32
NUP88-210ENST00000574867 EPB41L5Q9HCM4 733 aa17.06■□□□□ 0.32
NUP88-210ENST00000574867 TCAF1Q9Y4C2 921 aa17.06■□□□□ 0.32
NUP88-210ENST00000574867 MROH6A6NGR9 719 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 SLC31A1O15431 190 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 MGAT1P26572 445 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 ARL4CP56559 192 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 HIF1AQ16665 826 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 RGL4Q8IZJ4 473 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 ZCCHC9Q8N567 271 aaKnown RBP17.05■□□□□ 0.32
NUP88-210ENST00000574867 SERAC1Q96JX3 654 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 ORAI3Q9BRQ5 295 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 SEMA4AQ9H3S1 761 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 MRM3Q9HC36 420 aaKnown RBP17.05■□□□□ 0.32
NUP88-210ENST00000574867 EIF2B4Q9UI10 523 aaKnown RBP17.05■□□□□ 0.32
NUP88-210ENST00000574867 RIMKLBQ9ULI2 386 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 ESYT3A0FGR9 886 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 SDR42E2A6NKP2 422 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 AVILO75366 819 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 HOXD12P35452 270 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 HADHAP40939 763 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 DPTQ07507 201 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 ESRP1Q6NXG1 681 aaKnown RBP17.05■□□□□ 0.32
NUP88-210ENST00000574867 NLRP8Q86W28 1048 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 TP53I13Q8NBR0 393 aaPredicted RBP17.05■□□□□ 0.32
NUP88-210ENST00000574867 TMEM145Q8NBT3 493 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 FAM174AQ8TBP5 190 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 STYXQ8WUJ0 223 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 CENPTQ96BT3 561 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 KLF6Q99612 283 aaPredicted RBP17.05■□□□□ 0.32
NUP88-210ENST00000574867 FOXP3Q9BZS1 431 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 PHACTR1Q9C0D0 580 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 EBF2Q9HAK2 575 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 SYBUQ9NX95 663 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 SAMD15Q9P1V8 674 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 SUSD2Q9UGT4 822 aa17.05■□□□□ 0.32
NUP88-210ENST00000574867 SMG5Q9UPR3 1016 aaKnown RBP17.05■□□□□ 0.32
NUP88-210ENST00000574867 PYGLP06737 847 aa17.04■□□□□ 0.32
NUP88-210ENST00000574867 RHOXF2BP0C7M4 288 aa17.04■□□□□ 0.32
NUP88-210ENST00000574867 SPAM1P38567 509 aa17.04■□□□□ 0.32
NUP88-210ENST00000574867 NBL1P41271 181 aa17.04■□□□□ 0.32
NUP88-210ENST00000574867 IRF4Q15306 451 aa17.04■□□□□ 0.32
NUP88-210ENST00000574867 SKIDA1Q1XH10 827 aa17.04■□□□□ 0.32
NUP88-210ENST00000574867 CCDC38Q502W7 563 aa17.04■□□□□ 0.32
NUP88-210ENST00000574867 AP2M1Q96CW1 435 aa17.04■□□□□ 0.32
NUP88-210ENST00000574867 LRRC39Q96DD0 335 aa17.04■□□□□ 0.32
NUP88-210ENST00000574867 RHOXF2Q9BQY4 288 aa17.04■□□□□ 0.32
NUP88-210ENST00000574867 FAM83DQ9H4H8 585 aa17.04■□□□□ 0.32
NUP88-210ENST00000574867 FZD3Q9NPG1 666 aa17.04■□□□□ 0.32
NUP88-210ENST00000574867 SOX13Q9UN79 622 aa17.04■□□□□ 0.32
NUP88-210ENST00000574867 DOCK9Q9BZ29 2069 aa17.04■□□□□ 0.32
NUP88-210ENST00000574867 MAGEB16A2A368 324 aa17.03■□□□□ 0.32
NUP88-210ENST00000574867 FPGTO14772 594 aa17.03■□□□□ 0.32
NUP88-210ENST00000574867 BPIP17213 487 aa17.03■□□□□ 0.32
NUP88-210ENST00000574867 ITPKAP23677 461 aa17.03■□□□□ 0.32
NUP88-210ENST00000574867 PSMA3P25788 255 aa17.03■□□□□ 0.32
NUP88-210ENST00000574867 PLTPP55058 493 aa17.03■□□□□ 0.32
NUP88-210ENST00000574867 RACK1P63244 317 aaKnown RBP17.03■□□□□ 0.32
NUP88-210ENST00000574867 MTM1Q13496 603 aa17.03■□□□□ 0.32
NUP88-210ENST00000574867 CUL1Q13616 776 aa17.03■□□□□ 0.32
NUP88-210ENST00000574867 WSCD2Q2TBF2 565 aa17.03■□□□□ 0.32
NUP88-210ENST00000574867 PEAR1Q5VY43 1037 aaPredicted RBP17.03■□□□□ 0.32
NUP88-210ENST00000574867 LAIR1Q6GTX8 287 aa17.03■□□□□ 0.32
NUP88-210ENST00000574867 RABEPKQ7Z6M1 372 aa17.03■□□□□ 0.32
NUP88-210ENST00000574867 IFT20Q8IY31 132 aa17.03■□□□□ 0.32
NUP88-210ENST00000574867 OR4K2Q8NGD2 314 aa17.03■□□□□ 0.32
NUP88-210ENST00000574867 FBXO25Q8TCJ0 367 aa17.03■□□□□ 0.32
NUP88-210ENST00000574867 DTX3LQ8TDB6 740 aa17.03■□□□□ 0.32
NUP88-210ENST00000574867 KIFC1Q9BW19 673 aa17.03■□□□□ 0.32
NUP88-210ENST00000574867 MIR1-1HGQ9H1L0 117 aa17.03■□□□□ 0.32
NUP88-210ENST00000574867 ABCG8Q9H221 673 aa17.03■□□□□ 0.32
NUP88-210ENST00000574867 NLE1Q9NVX2 485 aaPredicted RBP17.03■□□□□ 0.32
NUP88-210ENST00000574867 CD84Q9UIB8 345 aa17.03■□□□□ 0.32
NUP88-210ENST00000574867 HS3ST3A1Q9Y663 406 aa17.03■□□□□ 0.32
NUP88-210ENST00000574867 MUC6Q6W4X9 2439 aa17.03■□□□□ 0.32
NUP88-210ENST00000574867 TOR1BO14657 336 aa17.03■□□□□ 0.32
NUP88-210ENST00000574867 RAD51BO15315 384 aa17.03■□□□□ 0.32
NUP88-210ENST00000574867 BUD23O43709 281 aaKnown RBP17.03■□□□□ 0.32
NUP88-210ENST00000574867 GNSP15586 552 aa17.03■□□□□ 0.32
NUP88-210ENST00000574867 TSHRP16473 764 aa17.03■□□□□ 0.32
NUP88-210ENST00000574867 TEAD1P28347 426 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms