RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 ZFYVE1Q9HBF4 777 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 SNX15Q9NRS6 342 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 CATSPERZQ9NTU4 200 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 KCTD5Q9NXV2 234 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 DKK3Q9UBP4 350 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 SUN2Q9UH99 717 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 ERVW-1Q9UQF0 538 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 VWA7Q9Y334 891 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 PCDHB9Q9Y5E1 797 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 PCDHB1Q9Y5F3 818 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 PCDHGC4Q9Y5F7 938 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 SLC30A1Q9Y6M5 507 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 EYSQ5T1H1 3165 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 A0A096LPK6 155 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 A0A0J9YYE9 177 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 CAPN8A6NHC0 703 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 TPP1O14773 563 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 NDUFS3O75489 264 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 CSPG5O95196 566 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 PRLP01236 227 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 TRBC1P01850 177 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 ESR1P03372 595 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 ALDOAP04075 364 aaKnown RBP7.97□□□□□ -1.13
VPS39-213ENST00000570062 PRNPP04156 253 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 C2P06681 752 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 RBP1P09455 135 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 PSMC3P17980 439 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 SERPINB5P36952 375 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 PTGER3P43115 390 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 ETV4P43268 484 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 SERPINB4P48594 390 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 ZNF140P52738 457 aaPredicted RBP7.97□□□□□ -1.13
VPS39-213ENST00000570062 CACNG1Q06432 222 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 HYAL1Q12794 435 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 TRAF2Q12933 501 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 OLIG2Q13516 323 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 PDE1CQ14123 709 aaPredicted RBP7.97□□□□□ -1.13
VPS39-213ENST00000570062 GALNT3Q14435 633 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 CBX2Q14781 532 aaPredicted RBP7.97□□□□□ -1.13
VPS39-213ENST00000570062 TYSND1Q2T9J0 566 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 TCEAL5Q5H9L2 206 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 GDPD4Q6W3E5 623 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 TPRG1Q6ZUI0 275 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 YTHDF3Q7Z739 585 aaKnown RBP7.97□□□□□ -1.13
VPS39-213ENST00000570062 PIGWQ7Z7B1 504 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 ADIPOR2Q86V24 386 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 NUDCD3Q8IVD9 361 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 MEIOBQ8N635 442 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 CCDC63Q8NA47 563 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 CCDC197Q8NCU1 140 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 PPP1R14CQ8TAE6 165 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 MGARPQ8TDB4 240 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 GDPD5Q8WTR4 605 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 PDCD6IPQ8WUM4 868 aaKnown RBP7.97□□□□□ -1.13
VPS39-213ENST00000570062 HEXDCQ8WVB3 486 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 PIH1D2Q8WWB5 315 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 ZNF75CPQ92670 426 aaPredicted RBP7.97□□□□□ -1.13
VPS39-213ENST00000570062 BHMTQ93088 406 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 ZBTB9Q96C00 473 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 ECHDC3Q96DC8 303 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 ASIC4Q96FT7 647 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 AGAP2Q99490 1192 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 FAM83CQ9BQN1 747 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 LINC00597Q9H2U6 94 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 IGFLR1Q9H665 355 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 ECT2Q9H8V3 914 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 CERS4Q9HA82 394 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 ELOVL2Q9NXB9 296 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 PLK2Q9NYY3 685 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 KLHL14Q9P2G3 628 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 EVLQ9UI08 416 aaPredicted RBP7.97□□□□□ -1.13
VPS39-213ENST00000570062 INTS6Q9UL03 887 aaKnown RBP7.97□□□□□ -1.13
VPS39-213ENST00000570062 TMCO1Q9UM00 188 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 WNT6Q9Y6F9 365 aa7.97□□□□□ -1.13
VPS39-213ENST00000570062 ZNF638Q14966 1978 aaKnown RBP7.97□□□□□ -1.13
VPS39-213ENST00000570062 FAM95CA0A1B0GW59 222 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 HMX2A2RU54 273 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 TCP11X1B4DZS4 312 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 GOLGA8RI6L899 631 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 TRAFD1O14545 582 aaPredicted RBP7.96□□□□□ -1.14
VPS39-213ENST00000570062 TULP3O75386 442 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 KIAA0754O94854 1291 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 KLHL2O95198 593 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 MT-CO1P00395 513 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 GOT2P00505 430 aaKnown RBP7.96□□□□□ -1.14
VPS39-213ENST00000570062 CYP17A1P05093 508 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 BPGMP07738 259 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 CISD3P0C7P0 127 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 CPA3P15088 417 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 CREB1P16220 341 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 ZNF7P17097 686 aaPredicted RBP7.96□□□□□ -1.14
VPS39-213ENST00000570062 TAC1P20366 129 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 ITGALP20701 1170 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 DRD4P21917 467 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 XPAP23025 273 aaPredicted RBP7.96□□□□□ -1.14
VPS39-213ENST00000570062 ARNTP27540 789 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 ABL2P42684 1182 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 SLC1A2P43004 574 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 RGRP47804 291 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 CCNHP51946 323 aaPredicted RBP7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms