RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 KHDC1Q4VXA5 237 aaKnown RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 CEP55Q53EZ4 464 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 CCDC157Q569K6 752 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 TDRD12Q587J7 1177 aaKnown RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 TCTE1Q5JU00 501 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 FAM205BPQ63HN1 556 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 B3GNTL1Q67FW5 361 aaPredicted RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 ARMC6Q6NXE6 501 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 IYDQ6PHW0 289 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 DCLRE1AQ6PJP8 1040 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 LRIG3Q6UXM1 1119 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 CCNI2Q6ZMN8 369 aaPredicted RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 Q6ZPA2 131 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 C15orf52Q6ZUT6 534 aaKnown RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 TMTC3Q6ZXV5 915 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 TTC7BQ86TV6 843 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 CCDC25Q86WR0 208 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 SLC22A9Q8IVM8 553 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 UNC45BQ8IWX7 931 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 CCDC36Q8IYA8 594 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 TCAIMQ8N3R3 496 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 FAM109AQ8N4B1 249 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 SLC44A3Q8N4M1 653 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 SH2D3CQ8N5H7 860 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 AOPEPQ8N6M6 819 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 ANKRD13CQ8N6S4 541 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 ANKRD42Q8N9B4 389 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 TERB1Q8NA31 727 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 MINDY2Q8NBR6 621 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 SLC4A11Q8NBS3 891 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 GPR150Q8NGU9 434 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 OR8K3Q8NH51 312 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 IFI44Q8TCB0 444 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 SLC2A14Q8TDB8 520 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 SCFD2Q8WU76 684 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 RAPGEF4Q8WZA2 1011 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 TRIM63Q969Q1 353 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 RAB7BQ96AH8 199 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 KLHL29Q96CT2 875 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 ZG16BQ96DA0 208 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 DGCR14Q96DF8 476 aaKnown RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 LTV1Q96GA3 475 aaPredicted RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 DNAJC1Q96KC8 554 aaKnown RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 PRICKLE1Q96MT3 831 aaPredicted RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 C7orf26Q96N11 449 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 TMEM237Q96Q45 408 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 BBS4Q96RK4 519 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 RANBP9Q96S59 729 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 AGAP2Q99490 1192 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 PLIN2Q99541 437 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 ZNF184Q99676 751 aaPredicted RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 VRK1Q99986 396 aaPredicted RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 DESI2Q9BSY9 194 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 MLPHQ9BV36 600 aaPredicted RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 ACAT2Q9BWD1 397 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 BRIP1Q9BX63 1249 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 GON7Q9BXV9 100 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 TTYH3Q9C0H2 523 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 C6orf62Q9GZU0 229 aaPredicted RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 NYXQ9GZU5 481 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 PAIP1Q9H074 479 aaKnown RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 LRMDAQ9H2I8 198 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 MROH8Q9H579 483 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 TFB2MQ9H5Q4 396 aaKnown RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 ELAC1Q9H777 363 aaKnown RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 SH2D4AQ9H788 454 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 CNOT10Q9H9A5 744 aaKnown RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 GALNT9Q9HCQ5 603 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 SLAMF7Q9NQ25 335 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 TIGARQ9NQ88 270 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 MAN1C1Q9NR34 630 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 TBC1D14Q9P2M4 693 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 NKX1-2Q9UD57 310 aaPredicted RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 ENOPH1Q9UHY7 261 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 GNPTGQ9UJJ9 305 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 TINAGQ9UJW2 476 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 DNAJC12Q9UKB3 198 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 VPS4AQ9UN37 437 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 SNX7Q9UNH6 387 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 COG5Q9UP83 839 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 GINS2Q9Y248 185 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 ERGIC3Q9Y282 383 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 RPH3AQ9Y2J0 694 aaPredicted RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 RRP7AQ9Y3A4 280 aaKnown RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 CBY1Q9Y3M2 126 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 CHTOPQ9Y3Y2 248 aaKnown RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 MTF2Q9Y483 593 aaPredicted RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 PCDHB1Q9Y5F3 818 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 A0A1B0GUL6 1792 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 ADGRL1O94910 1474 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 ABCC10Q5T3U5 1492 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 MLH3Q9UHC1 1453 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 PTPRUQ92729 1446 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 KNDC1Q76NI1 1749 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 ANKRD26Q9UPS8 1709 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 FLT1P17948 1338 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 NRCAMQ92823 1304 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 KDM5AP29375 1690 aaKnown RBP3.28□□□□□ -1.88
VPS35-208ENST00000568612 A0A1B0GTQ1 180 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 LOC390937A0A1W2PQ73 354 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms