RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 SLC14A2Q15849 920 aa17.28■□□□□ 0.36
CLN3-217ENST00000565354 CCNG2Q16589 344 aa17.28■□□□□ 0.36
CLN3-217ENST00000565354 DENND2CQ68D51 928 aa17.28■□□□□ 0.36
CLN3-217ENST00000565354 DHRS13Q6UX07 377 aa17.28■□□□□ 0.36
CLN3-217ENST00000565354 PIH1D2Q8WWB5 315 aa17.28■□□□□ 0.36
CLN3-217ENST00000565354 SPOCK2Q92563 424 aa17.28■□□□□ 0.36
CLN3-217ENST00000565354 PPP1R2P1Q96PQ5 205 aa17.28■□□□□ 0.36
CLN3-217ENST00000565354 FSD1LQ9BXM9 530 aa17.28■□□□□ 0.36
CLN3-217ENST00000565354 USP29Q9HBJ7 922 aa17.28■□□□□ 0.36
CLN3-217ENST00000565354 GOLGA6AQ9NYA3 693 aa17.28■□□□□ 0.36
CLN3-217ENST00000565354 COQ6Q9Y2Z9 468 aa17.28■□□□□ 0.36
CLN3-217ENST00000565354 PLXNA2O75051 1894 aa17.28■□□□□ 0.36
CLN3-217ENST00000565354 COL5A1P20908 1838 aaPredicted RBP17.28■□□□□ 0.36
CLN3-217ENST00000565354 NAV2Q8IVL1 2488 aa17.27■□□□□ 0.36
CLN3-217ENST00000565354 C5orf60A6NFR6 353 aa17.27■□□□□ 0.36
CLN3-217ENST00000565354 MAGEC1O60732 1142 aa17.27■□□□□ 0.36
CLN3-217ENST00000565354 IFNB1P01574 187 aa17.27■□□□□ 0.36
CLN3-217ENST00000565354 ALPIP09923 528 aa17.27■□□□□ 0.36
CLN3-217ENST00000565354 ITPKBP27987 946 aa17.27■□□□□ 0.36
CLN3-217ENST00000565354 PSMB4P28070 264 aa17.27■□□□□ 0.36
CLN3-217ENST00000565354 STIP1P31948 543 aaKnown RBP17.27■□□□□ 0.36
CLN3-217ENST00000565354 MPP3Q13368 585 aa17.27■□□□□ 0.36
CLN3-217ENST00000565354 ACOX1Q15067 660 aa17.27■□□□□ 0.36
CLN3-217ENST00000565354 GSTA5Q7RTV2 222 aa17.27■□□□□ 0.36
CLN3-217ENST00000565354 TMPRSS12Q86WS5 348 aa17.27■□□□□ 0.36
CLN3-217ENST00000565354 RASGEF1CQ8N431 466 aa17.27■□□□□ 0.36
CLN3-217ENST00000565354 CCDC89Q8N998 374 aa17.27■□□□□ 0.36
CLN3-217ENST00000565354 IPMKQ8NFU5 416 aa17.27■□□□□ 0.36
CLN3-217ENST00000565354 NXPE2Q96DL1 559 aa17.27■□□□□ 0.36
CLN3-217ENST00000565354 SCRN2Q96FV2 425 aa17.27■□□□□ 0.36
CLN3-217ENST00000565354 MS4A14Q96JA4 679 aa17.27■□□□□ 0.36
CLN3-217ENST00000565354 MLPHQ9BV36 600 aaPredicted RBP17.27■□□□□ 0.36
CLN3-217ENST00000565354 C1QTNF2Q9BXJ5 285 aa17.27■□□□□ 0.36
CLN3-217ENST00000565354 PRORYQ9H606 182 aa17.27■□□□□ 0.36
CLN3-217ENST00000565354 KCND1Q9NSA2 647 aa17.27■□□□□ 0.36
CLN3-217ENST00000565354 FTSJ1Q9UET6 329 aa17.27■□□□□ 0.36
CLN3-217ENST00000565354 AAR2Q9Y312 384 aaKnown RBP17.27■□□□□ 0.36
CLN3-217ENST00000565354 A0A0J9YYE9 177 aa17.26■□□□□ 0.35
CLN3-217ENST00000565354 GOLGA6L10A0A0M3HER8 536 aa17.26■□□□□ 0.35
CLN3-217ENST00000565354 H0Y8X5 98 aa17.26■□□□□ 0.35
CLN3-217ENST00000565354 CES2O00748 559 aa17.26■□□□□ 0.35
CLN3-217ENST00000565354 FPGTO14772 594 aa17.26■□□□□ 0.35
CLN3-217ENST00000565354 TRBC1P01850 177 aa17.26■□□□□ 0.35
CLN3-217ENST00000565354 HNF1BP35680 557 aa17.26■□□□□ 0.35
CLN3-217ENST00000565354 WNT3AP56704 352 aa17.26■□□□□ 0.35
CLN3-217ENST00000565354 RALGDSQ12967 914 aa17.26■□□□□ 0.35
CLN3-217ENST00000565354 IHHQ14623 411 aa17.26■□□□□ 0.35
CLN3-217ENST00000565354 OASLQ15646 514 aaKnown RBP17.26■□□□□ 0.35
CLN3-217ENST00000565354 P3H1Q32P28 736 aa17.26■□□□□ 0.35
CLN3-217ENST00000565354 INAVAQ3KP66 663 aa17.26■□□□□ 0.35
CLN3-217ENST00000565354 LAYNQ6UX15 382 aa17.26■□□□□ 0.35
CLN3-217ENST00000565354 LIPIQ6XZB0 460 aa17.26■□□□□ 0.35
CLN3-217ENST00000565354 DENND6BQ8NEG7 585 aa17.26■□□□□ 0.35
CLN3-217ENST00000565354 ASB12Q8WXK4 309 aa17.26■□□□□ 0.35
CLN3-217ENST00000565354 WDR24Q96S15 920 aa17.26■□□□□ 0.35
CLN3-217ENST00000565354 ORAI3Q9BRQ5 295 aa17.26■□□□□ 0.35
CLN3-217ENST00000565354 CA5BQ9Y2D0 317 aa17.26■□□□□ 0.35
CLN3-217ENST00000565354 PPIL1Q9Y3C6 166 aa17.26■□□□□ 0.35
CLN3-217ENST00000565354 MGAQ8IWI9 3026 aa17.26■□□□□ 0.35
CLN3-217ENST00000565354 TRPM6Q9BX84 2022 aa17.25■□□□□ 0.35
CLN3-217ENST00000565354 CAPN8A6NHC0 703 aa17.25■□□□□ 0.35
CLN3-217ENST00000565354 NPIPB15A6NHN6 443 aaPredicted RBP17.25■□□□□ 0.35
CLN3-217ENST00000565354 ANKRD66B4E2M5 251 aa17.25■□□□□ 0.35
CLN3-217ENST00000565354 C10orf142B7Z368 130 aa17.25■□□□□ 0.35
CLN3-217ENST00000565354 GCATO75600 419 aa17.25■□□□□ 0.35
CLN3-217ENST00000565354 HEXIM1O94992 359 aaKnown RBP17.25■□□□□ 0.35
CLN3-217ENST00000565354 NDST3O95803 873 aa17.25■□□□□ 0.35
CLN3-217ENST00000565354 PRLP01236 227 aa17.25■□□□□ 0.35
CLN3-217ENST00000565354 ITGAVP06756 1048 aa17.25■□□□□ 0.35
CLN3-217ENST00000565354 CTSKP43235 329 aa17.25■□□□□ 0.35
CLN3-217ENST00000565354 GDF10P55107 478 aa17.25■□□□□ 0.35
CLN3-217ENST00000565354 FGL2Q14314 439 aa17.25■□□□□ 0.35
CLN3-217ENST00000565354 SIX1Q15475 284 aaPredicted RBP17.25■□□□□ 0.35
CLN3-217ENST00000565354 QPCTQ16769 361 aa17.25■□□□□ 0.35
CLN3-217ENST00000565354 PTAR1Q7Z6K3 402 aaPredicted RBP17.25■□□□□ 0.35
CLN3-217ENST00000565354 SLC25A41Q8N5S1 370 aa17.25■□□□□ 0.35
CLN3-217ENST00000565354 MFSD2AQ8NA29 543 aa17.25■□□□□ 0.35
CLN3-217ENST00000565354 LSM14AQ8ND56 463 aaKnown RBP17.25■□□□□ 0.35
CLN3-217ENST00000565354 FAM174AQ8TBP5 190 aa17.25■□□□□ 0.35
CLN3-217ENST00000565354 COG1Q8WTW3 980 aa17.25■□□□□ 0.35
CLN3-217ENST00000565354 KLHDC7BQ96G42 594 aa17.25■□□□□ 0.35
CLN3-217ENST00000565354 OXNAD1Q96HP4 312 aaPredicted RBP17.25■□□□□ 0.35
CLN3-217ENST00000565354 LENG8Q96PV6 779 aaPredicted RBP17.25■□□□□ 0.35
CLN3-217ENST00000565354 MCCC1Q96RQ3 725 aaPredicted RBP17.25■□□□□ 0.35
CLN3-217ENST00000565354 HS3ST3A1Q9Y663 406 aa17.25■□□□□ 0.35
CLN3-217ENST00000565354 SAR1BQ9Y6B6 198 aa17.25■□□□□ 0.35
CLN3-217ENST00000565354 C1orf232A0A0U1RR37 186 aa17.24■□□□□ 0.35
CLN3-217ENST00000565354 A6NNZ2 444 aa17.24■□□□□ 0.35
CLN3-217ENST00000565354 VILLO15195 856 aa17.24■□□□□ 0.35
CLN3-217ENST00000565354 ZNF185O15231 689 aa17.24■□□□□ 0.35
CLN3-217ENST00000565354 DFNA5O60443 496 aa17.24■□□□□ 0.35
CLN3-217ENST00000565354 RECQL5O94762 991 aaPredicted RBP17.24■□□□□ 0.35
CLN3-217ENST00000565354 PLA2G2AP14555 144 aa17.24■□□□□ 0.35
CLN3-217ENST00000565354 ZNF30P17039 623 aa17.24■□□□□ 0.35
CLN3-217ENST00000565354 CASQ1P31415 396 aa17.24■□□□□ 0.35
CLN3-217ENST00000565354 EIF2S3P41091 472 aaKnown RBP17.24■□□□□ 0.35
CLN3-217ENST00000565354 LMAN1P49257 510 aa17.24■□□□□ 0.35
CLN3-217ENST00000565354 CLDN2P57739 230 aa17.24■□□□□ 0.35
CLN3-217ENST00000565354 LRRC14Q15048 493 aa17.24■□□□□ 0.35
CLN3-217ENST00000565354 CNGA3Q16281 694 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms