RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 CES1P23141 567 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 AKT2P31751 481 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 RPL22P35268 128 aaKnown RBP9.21□□□□□ -0.94
VPS35-206ENST00000565228 TRIM23P36406 574 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 SUOXP51687 545 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 PDE1CQ14123 709 aaPredicted RBP9.21□□□□□ -0.94
VPS35-206ENST00000565228 STAT4Q14765 748 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 LRRC14Q15048 493 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 ACOX1Q15067 660 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 SLC1A5Q15758 541 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 ZNF648Q5T619 568 aaPredicted RBP9.21□□□□□ -0.94
VPS35-206ENST00000565228 SEL1L2Q5TEA6 688 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 CCDC181Q5TID7 509 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 ESRP1Q6NXG1 681 aaKnown RBP9.21□□□□□ -0.94
VPS35-206ENST00000565228 ERAP2Q6P179 960 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 PTAR1Q7Z6K3 402 aaPredicted RBP9.21□□□□□ -0.94
VPS35-206ENST00000565228 TRIM74Q86UV6 250 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 GPR161Q8N6U8 529 aaKnown RBP9.21□□□□□ -0.94
VPS35-206ENST00000565228 PNPLA1Q8N8W4 532 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 DENND6BQ8NEG7 585 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 DEFB124Q8NES8 71 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 KLHDC7BQ96G42 594 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 ALS2CR12Q96Q35 445 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 ELF4Q99607 663 aaPredicted RBP9.21□□□□□ -0.94
VPS35-206ENST00000565228 APOOQ9BUR5 198 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 FICDQ9BVA6 458 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 AP1M1Q9BXS5 423 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 CLPBQ9H078 707 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 TM7SF3Q9NS93 570 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 KCND1Q9NSA2 647 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 TOR4AQ9NXH8 423 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 FAM153AQ9UHL3 310 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 RSPH14Q9UHP6 348 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 SNX12Q9UMY4 172 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 NEU2Q9Y3R4 380 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 ZNF711Q9Y462 761 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 JRKLQ9Y4A0 524 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 OAS3Q9Y6K5 1087 aaKnown RBP9.21□□□□□ -0.94
VPS35-206ENST00000565228 U3KQA8 63 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 RP1P56715 2156 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 SETXQ7Z333 2677 aaKnown RBP9.21□□□□□ -0.94
VPS35-206ENST00000565228 A6NNZ2 444 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 TRIM38O00635 465 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 NEBLO76041 1014 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 BPIP17213 487 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 EPHA8P29322 1005 aaPredicted RBP9.2□□□□□ -0.94
VPS35-206ENST00000565228 DPP6P42658 865 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 RXRGP48443 463 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 POLD2P49005 469 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 SPINT3P49223 89 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 POLR2LP62875 67 aaKnown RBP9.2□□□□□ -0.94
VPS35-206ENST00000565228 ARHGAP8P85298 464 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 CCDC15Q0P6D6 951 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 SGCGQ13326 291 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 TCEA2Q15560 299 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 CCNG2Q16589 344 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 ALG11Q2TAA5 492 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 KHDC1Q4VXA5 237 aaKnown RBP9.2□□□□□ -0.94
VPS35-206ENST00000565228 CFAP58Q5T655 872 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 PAPD7Q5XG87 772 aaKnown RBP9.2□□□□□ -0.94
VPS35-206ENST00000565228 PNCKQ6P2M8 343 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 ZNF534Q76KX8 674 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 IQCHQ86VS3 1027 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 CREG2Q8IUH2 290 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 PDCD7Q8N8D1 485 aaKnown RBP9.2□□□□□ -0.94
VPS35-206ENST00000565228 CCL4L1Q8NHW4 92 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 NAT14Q8WUY8 206 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 OR1E3Q8WZA6 343 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 TSACCQ96A04 125 aaPredicted RBP9.2□□□□□ -0.94
VPS35-206ENST00000565228 NUS1Q96E22 293 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 PDXPQ96GD0 296 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 VAT1Q99536 393 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 RIOK2Q9BVS4 552 aaKnown RBP9.2□□□□□ -0.94
VPS35-206ENST00000565228 ERVMER34-1Q9H9K5 563 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 ETNK1Q9HBU6 452 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 FGF22Q9HCT0 170 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 BPIFA1Q9NP55 256 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 ARFGAP3Q9NP61 516 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 TRHDEQ9UKU6 1024 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 PCOLCE2Q9UKZ9 415 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 TTC7AQ9ULT0 858 aaPredicted RBP9.2□□□□□ -0.94
VPS35-206ENST00000565228 PLEKHM1Q9Y4G2 1056 aa9.2□□□□□ -0.94
VPS35-206ENST00000565228 PTPRBP23467 1997 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 C1orf232A0A0U1RR37 186 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 SPAARA0A1B0GVQ0 90 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 A0A1W2PQ67 120 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 CCL22O00626 93 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 FPGTO14772 594 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 ZSCAN12O43309 604 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 MTSS1O43312 755 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 OPHN1O60890 802 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 PIAS2O75928 621 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 KCNK5O95279 499 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 CSF2P04141 144 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 CEACAM5P06731 702 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 ITGAVP06756 1048 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 SYPP08247 313 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 ZNF883P0CG24 379 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 PRSS56P0CW18 603 aa9.19□□□□□ -0.94
VPS35-206ENST00000565228 CYP2A6P11509 494 aaPredicted RBP9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms