RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 CCDC42Q96M95 316 aa10.28□□□□□ -0.76
CLK3-205ENST00000561673 ZNF578Q96N58 590 aaPredicted RBP10.28□□□□□ -0.76
CLK3-205ENST00000561673 SLC46A1Q96NT5 459 aa10.28□□□□□ -0.76
CLK3-205ENST00000561673 RNF157Q96PX1 679 aa10.28□□□□□ -0.76
CLK3-205ENST00000561673 DTLQ9NZJ0 730 aa10.28□□□□□ -0.76
CLK3-205ENST00000561673 MOSPD1Q9UJG1 213 aa10.28□□□□□ -0.76
CLK3-205ENST00000561673 SATB2Q9UPW6 733 aa10.28□□□□□ -0.76
CLK3-205ENST00000561673 CHKBQ9Y259 395 aa10.28□□□□□ -0.76
CLK3-205ENST00000561673 TTLL3Q9Y4R7 772 aa10.28□□□□□ -0.76
CLK3-205ENST00000561673 MGAQ8IWI9 3026 aa10.28□□□□□ -0.76
CLK3-205ENST00000561673 ATMQ13315 3056 aa10.27□□□□□ -0.76
CLK3-205ENST00000561673 KALRNO60229 2985 aa10.27□□□□□ -0.76
CLK3-205ENST00000561673 A0A0J9YYE9 177 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 PMS2P1A4D2B8 440 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 GOLGA6CA6NDK9 693 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 GOLGA6BA6NDN3 693 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 C3orf70A6NLC5 250 aaPredicted RBP10.27□□□□□ -0.77
CLK3-205ENST00000561673 NOBOXO60393 691 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 MFAP3LO75121 409 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 JCHAINP01591 159 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 TRBC1P01850 177 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 HLA-DQB2P05538 268 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 GOLGA6DP0CG33 693 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 KRT10P13645 584 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 MX2P20592 715 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 POLD2P49005 469 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 PDX1P52945 283 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 ERVPABLB-1P60509 514 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 CDK3Q00526 305 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 TLE3Q04726 772 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 DPTQ07507 201 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 NIPAL4Q0D2K0 466 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 SPIDRQ14159 915 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 SOWAHCQ53LP3 525 aaPredicted RBP10.27□□□□□ -0.77
CLK3-205ENST00000561673 C3orf38Q5JPI3 329 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 FAM182AQ5T1J6 154 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 LRRC66Q68CR7 880 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 RAET1GQ6H3X3 334 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 NRROSQ86YC3 692 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 SPACA3Q8IXA5 215 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 NDUFAF2Q8N183 169 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 Q8N9G6 341 aaPredicted RBP10.27□□□□□ -0.77
CLK3-205ENST00000561673 OR6C4Q8NGE1 309 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 GPBAR1Q8TDU6 330 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 PTCD2Q8WV60 388 aaKnown RBP10.27□□□□□ -0.77
CLK3-205ENST00000561673 HDAC11Q96DB2 347 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 PRR11Q96HE9 360 aaPredicted RBP10.27□□□□□ -0.77
CLK3-205ENST00000561673 NAF1Q96HR8 494 aaKnown RBP10.27□□□□□ -0.77
CLK3-205ENST00000561673 LGMNQ99538 433 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 FRMD8Q9BZ67 464 aaPredicted RBP10.27□□□□□ -0.77
CLK3-205ENST00000561673 DPEP2Q9H4A9 486 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 PRORYQ9H606 182 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 SUDS3Q9H7L9 328 aaPredicted RBP10.27□□□□□ -0.77
CLK3-205ENST00000561673 SYNDIG1Q9H7V2 258 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 CARS2Q9HA77 564 aaKnown RBP10.27□□□□□ -0.77
CLK3-205ENST00000561673 ASCL3Q9NQ33 180 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 PHPT1Q9NRX4 125 aaPredicted RBP10.27□□□□□ -0.77
CLK3-205ENST00000561673 GOLGA6AQ9NYA3 693 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 AMACRQ9UHK6 382 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 CD84Q9UIB8 345 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 ASXL3Q9C0F0 2248 aa10.27□□□□□ -0.77
CLK3-205ENST00000561673 A0A1W2PQM1 296 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 LRRD1A4D1F6 860 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 ZNF487B1APH4 448 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 B4DGG1 531 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 KCNK1O00180 336 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 MTA2O94776 668 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 SOD1P00441 154 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 RPLP0P05388 317 aaKnown RBP10.26□□□□□ -0.77
CLK3-205ENST00000561673 MMP2P08253 660 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 GLB1P16278 677 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 TEAD1P28347 426 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 RBMS1P29558 406 aaKnown RBP10.26□□□□□ -0.77
CLK3-205ENST00000561673 GPR1P46091 355 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 GNPDA1P46926 289 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 EPHB1P54762 984 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 PCBP4P57723 403 aaKnown RBP10.26□□□□□ -0.77
CLK3-205ENST00000561673 PPIDQ08752 370 aaKnown RBP10.26□□□□□ -0.77
CLK3-205ENST00000561673 TBX2Q13207 712 aaPredicted RBP10.26□□□□□ -0.77
CLK3-205ENST00000561673 HLTFQ14527 1009 aaKnown RBP eCLIP10.26□□□□□ -0.77
CLK3-205ENST00000561673 CERCAMQ5T4B2 595 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 FOXR1Q6PIV2 292 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 IGF2-ASQ6U949 168 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 B3GNT8Q7Z7M8 397 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 RHOT2Q8IXI1 618 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 CCDC13Q8IYE1 715 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 PLD5Q8N7P1 536 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 ZNF248Q8NDW4 579 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 SCAMP4Q969E2 229 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 AP2M1Q96CW1 435 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 BBC3Q96PG8 261 aaPredicted RBP10.26□□□□□ -0.77
CLK3-205ENST00000561673 GFM1Q96RP9 751 aaKnown RBP10.26□□□□□ -0.77
CLK3-205ENST00000561673 TDRD1Q9BXT4 1180 aaKnown RBP10.26□□□□□ -0.77
CLK3-205ENST00000561673 MAK16Q9BXY0 300 aaKnown RBP10.26□□□□□ -0.77
CLK3-205ENST00000561673 FOXP3Q9BZS1 431 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 ABCG8Q9H221 673 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 LRRN3Q9H3W5 708 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 PCDH9Q9HC56 1237 aa10.26□□□□□ -0.77
CLK3-205ENST00000561673 SPATS2LQ9NUQ6 558 aaKnown RBP10.26□□□□□ -0.77
CLK3-205ENST00000561673 HAUS2Q9NVX0 235 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms