RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 BTG3Q14201 252 aaPredicted RBP10.62□□□□□ -0.71
CUX1-217ENST00000558836 GEN1Q17RS7 908 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 TRMT5Q32P41 509 aaKnown RBP10.62□□□□□ -0.71
CUX1-217ENST00000558836 GK5Q6ZS86 529 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 FAM156AQ8NDB6 213 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 CCDC97Q96F63 343 aaPredicted RBP10.62□□□□□ -0.71
CUX1-217ENST00000558836 KCNA7Q96RP8 456 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 SLC30A3Q99726 388 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 KLF16Q9BXK1 252 aaPredicted RBP10.62□□□□□ -0.71
CUX1-217ENST00000558836 TDRD1Q9BXT4 1180 aaKnown RBP10.62□□□□□ -0.71
CUX1-217ENST00000558836 SARS2Q9NP81 518 aaKnown RBP10.62□□□□□ -0.71
CUX1-217ENST00000558836 TLR9Q9NR96 1032 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 POLR3BQ9NW08 1133 aaPredicted RBP10.62□□□□□ -0.71
CUX1-217ENST00000558836 CLEC4EQ9ULY5 219 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 POMPQ9Y244 141 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 PCDHB9Q9Y5E1 797 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 MICAL3Q7RTP6 2002 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 A0A1B0GVM2 712 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 TCAF2A6NFQ2 919 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 RHOBTB1O94844 696 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 EFEMP2O95967 443 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 RBP1P09455 135 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 ALPIP09923 528 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 CR2P20023 1033 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 PPARGP37231 505 aaPredicted RBP10.61□□□□□ -0.71
CUX1-217ENST00000558836 VHLP40337 213 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 CCNG1P51959 295 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 STC1P52823 247 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 CYLC2Q14093 348 aaPredicted RBP10.61□□□□□ -0.71
CUX1-217ENST00000558836 C5orf22Q49AR2 442 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 RNF111Q6ZNA4 994 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 TPGS1Q6ZTW0 290 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 REM2Q8IYK8 340 aaPredicted RBP10.61□□□□□ -0.71
CUX1-217ENST00000558836 PAF1Q8N7H5 531 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 PTGR2Q8N8N7 351 aaPredicted RBP10.61□□□□□ -0.71
CUX1-217ENST00000558836 TMA16Q96EY4 203 aaKnown RBP10.61□□□□□ -0.71
CUX1-217ENST00000558836 SLC45A3Q96JT2 553 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 CDRT15Q96T59 188 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 TMEM39AQ9NV64 488 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 BACE2Q9Y5Z0 518 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 RGSL1A5PLK6 1076 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 ANKRD66B4E2M5 251 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 C9JVG2 144 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 BNIP3LO60238 219 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 SRP72O76094 671 aaKnown RBP10.61□□□□□ -0.71
CUX1-217ENST00000558836 EPOP01588 193 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 ZNF37AP17032 561 aaPredicted RBP10.61□□□□□ -0.71
CUX1-217ENST00000558836 FOXA1P55317 472 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 CCNIQ14094 377 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 ZRANB3Q5FWF4 1079 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 METTL21CQ5VZV1 264 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 FAM45BPQ6NSW5 357 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 SDCCAG8Q86SQ7 713 aaPredicted RBP10.61□□□□□ -0.71
CUX1-217ENST00000558836 LCA5Q86VQ0 697 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 MYLK4Q86YV6 388 aaPredicted RBP10.61□□□□□ -0.71
CUX1-217ENST00000558836 RNF168Q8IYW5 571 aaPredicted RBP10.61□□□□□ -0.71
CUX1-217ENST00000558836 DSELQ8IZU8 1212 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 MAB21L3Q8N8X9 362 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 DCBLD1Q8N8Z6 715 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 PDZD8Q8NEN9 1154 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 OR9I1Q8NGQ6 314 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 GABPB2Q8TAK5 448 aaPredicted RBP10.61□□□□□ -0.71
CUX1-217ENST00000558836 FAM45AQ8TCE6 357 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 ACTRT2Q8TDY3 377 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 CNDP1Q96KN2 507 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 C3orf30Q96M34 536 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 GSTO2Q9H4Y5 243 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 CCDC167Q9P0B6 97 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 MED16Q9Y2X0 877 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 CPQQ9Y646 472 aa10.61□□□□□ -0.71
CUX1-217ENST00000558836 DNAH14Q0VDD8 3507 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 REV3LO60673 3130 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 ILVBLA1L0T0 632 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 CDC7O00311 574 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 SMAD6O43541 496 aaKnown RBP10.6□□□□□ -0.71
CUX1-217ENST00000558836 NPHS1O60500 1241 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 NIPSNAP2O75323 286 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 NDUFS3O75489 264 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 CRTAMO95727 393 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 CSF2RAP15509 400 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 FDXRP22570 491 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 CSKP41240 450 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 DPP6P42658 865 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 KPNA2P52292 529 aaKnown RBP10.6□□□□□ -0.71
CUX1-217ENST00000558836 ZNF140P52738 457 aaPredicted RBP10.6□□□□□ -0.71
CUX1-217ENST00000558836 SH3BP2P78314 561 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 ECT2LQ008S8 904 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 TNK2Q07912 1038 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 VEPH1Q14D04 833 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 PTPRNQ16849 979 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 CAMK1DQ8IU85 385 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 APCDD1Q8J025 514 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 PCDH20Q8N6Y1 951 aaKnown RBP10.6□□□□□ -0.71
CUX1-217ENST00000558836 PLD4Q96BZ4 506 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 ZNF333Q96JL9 665 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 ZFRQ96KR1 1074 aaKnown RBP10.6□□□□□ -0.71
CUX1-217ENST00000558836 CDK5RAP1Q96SZ6 601 aaKnown RBP10.6□□□□□ -0.71
CUX1-217ENST00000558836 GPR21Q99679 349 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 COMMD8Q9NX08 183 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 UTP6Q9NYH9 597 aaKnown RBP10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms