RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 OR6C70A6NIJ9 312 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 C19orf81C9J6K1 198 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 TRIM24O15164 1050 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 OR2B3O76000 313 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 SLC22A5O76082 557 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 SGPL1O95470 568 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 WDPCPO95876 746 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 GZMKP49863 264 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 GABARAPL2P60520 117 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 GTF2IP78347 998 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 FPGSQ05932 587 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 AANATQ16613 207 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 CBWD6Q4V339 395 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 CBWD3Q5JTY5 395 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 CBWD5Q5RIA9 395 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 PIK3R6Q5UE93 754 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 LIPIQ6XZB0 460 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 TSPYL5Q86VY4 417 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-226ENST00000556825 RHOT1Q8IXI2 618 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 SYTL1Q8IYJ3 562 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 TCTE3Q8IZS6 198 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 YIPF5Q969M3 257 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 CENPNQ96H22 339 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-226ENST00000556825 ZNF416Q9BWM5 594 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 PLA2G12BQ9BX93 195 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 UPF3AQ9H1J1 476 aaKnown RBP13.82□□□□□ -0.2
SHMT2-226ENST00000556825 SAV1Q9H4B6 383 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-226ENST00000556825 NIPAL2Q9H841 368 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 OPTCQ9UBM4 332 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 AGO1Q9UL18 857 aaKnown RBP13.82□□□□□ -0.2
SHMT2-226ENST00000556825 TLR6Q9Y2C9 796 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 DTX4Q9Y2E6 619 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.82□□□□□ -0.2
SHMT2-226ENST00000556825 GJA3Q9Y6H8 435 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 BAZ2BQ9UIF8 2168 aaKnown RBP13.81□□□□□ -0.2
SHMT2-226ENST00000556825 ASTN1O14525 1302 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 RIC1Q4ADV7 1423 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 MEIOCA2RUB1 952 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 KBTBD13C9JR72 458 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 AKR7A2O43488 359 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 NDUFS6O75380 124 aaKnown RBP13.81□□□□□ -0.2
SHMT2-226ENST00000556825 MED24O75448 989 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 ITGAVP06756 1048 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 ARRB2P32121 409 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 RPS9P46781 194 aaKnown RBP13.81□□□□□ -0.2
SHMT2-226ENST00000556825 PCBP1Q15365 356 aaKnown RBP eCLIP13.81□□□□□ -0.2
SHMT2-226ENST00000556825 BTBD16Q32M84 506 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 ZBTB41Q5SVQ8 909 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 RETREG3Q86VR2 466 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 P3H2Q8IVL5 708 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 GPALPP1Q8IXQ4 340 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 PARP16Q8N5Y8 322 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 BLOC1S5Q8TDH9 187 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 PHF21AQ96BD5 680 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 MUS81Q96NY9 551 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 PPP1R2P1Q96PQ5 205 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 ZNF300Q96RE9 604 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-226ENST00000556825 HDHD5Q9BXW7 423 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 ING2Q9H160 280 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 UNC93B1Q9H1C4 597 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 ZHX3Q9H4I2 956 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 UBE2TQ9NPD8 197 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-226ENST00000556825 PCDHB16Q9NRJ7 776 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 SCML1Q9UN30 329 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 ACOT9Q9Y305 439 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 SNX5Q9Y5X3 404 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 PSAT1Q9Y617 370 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 CNTNAP2Q9UHC6 1331 aa13.81□□□□□ -0.2
SHMT2-226ENST00000556825 SGK1O00141 431 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 EI24O14681 340 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 ANGPT2O15123 496 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 GATCO43716 136 aaKnown RBP13.8□□□□□ -0.2
SHMT2-226ENST00000556825 IFNB1P01574 187 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 C1QAP02745 245 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 HTR1AP08908 422 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 UQCRFS1P1P0C7P4 283 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 MSH3P20585 1137 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 FASP25445 335 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 DNAJB1P25685 340 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 ALDH4A1P30038 563 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 CPT1AP50416 773 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 LSM3P62310 102 aaKnown RBP13.8□□□□□ -0.2
SHMT2-226ENST00000556825 FLI1Q01543 452 aaPredicted RBP13.8□□□□□ -0.2
SHMT2-226ENST00000556825 PRKCDQ05655 676 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 KCNC3Q14003 757 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 BCL7AQ4VC05 210 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 ARHGAP36Q6ZRI8 547 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 ZNF781Q8N8C0 355 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 ZNF565Q8N9K5 539 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 SPATA18Q8TC71 538 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 TBCKQ8TEA7 893 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 DNAJA4Q8WW22 397 aaPredicted RBP13.8□□□□□ -0.2
SHMT2-226ENST00000556825 NPAS2Q99743 824 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 BCL2L14Q9BZR8 327 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 SOX17Q9H6I2 414 aaPredicted RBP13.8□□□□□ -0.2
SHMT2-226ENST00000556825 HPS4Q9NQG7 708 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 OAZ3Q9UMX2 235 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 ERVV-1B6SEH8 477 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 CLIC2O15247 247 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 KRT18P05783 430 aaKnown RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms