RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 CTF1Q16619 201 aa4.57□□□□□ -1.68
SCFD1-221ENST00000556534 DPCR1Q3MIW9 517 aa4.57□□□□□ -1.68
SCFD1-221ENST00000556534 GGNBP1Q5YKI7 109 aa4.57□□□□□ -1.68
SCFD1-221ENST00000556534 METTL2BQ6P1Q9 378 aaKnown RBP4.57□□□□□ -1.68
SCFD1-221ENST00000556534 KCTD18Q6PI47 426 aaPredicted RBP4.57□□□□□ -1.68
SCFD1-221ENST00000556534 CYP20A1Q6UW02 462 aa4.57□□□□□ -1.68
SCFD1-221ENST00000556534 DSTYKQ6XUX3 929 aa4.57□□□□□ -1.68
SCFD1-221ENST00000556534 SLC36A4Q6YBV0 504 aa4.57□□□□□ -1.68
SCFD1-221ENST00000556534 CCNI2Q6ZMN8 369 aaPredicted RBP4.57□□□□□ -1.68
SCFD1-221ENST00000556534 DPPA4Q7L190 304 aa4.57□□□□□ -1.68
SCFD1-221ENST00000556534 CCDC13Q8IYE1 715 aa4.57□□□□□ -1.68
SCFD1-221ENST00000556534 PAF1Q8N7H5 531 aa4.57□□□□□ -1.68
SCFD1-221ENST00000556534 SMRP1Q8NCR6 262 aa4.57□□□□□ -1.68
SCFD1-221ENST00000556534 METTL2AQ96IZ6 378 aaKnown RBP4.57□□□□□ -1.68
SCFD1-221ENST00000556534 C3orf30Q96M34 536 aa4.57□□□□□ -1.68
SCFD1-221ENST00000556534 MAP7D2Q96T17 732 aa4.57□□□□□ -1.68
SCFD1-221ENST00000556534 PDCL3Q9H2J4 239 aa4.57□□□□□ -1.68
SCFD1-221ENST00000556534 ZNF556Q9HAH1 456 aa4.57□□□□□ -1.68
SCFD1-221ENST00000556534 IRAK4Q9NWZ3 460 aa4.57□□□□□ -1.68
SCFD1-221ENST00000556534 LIMA1Q9UHB6 759 aaKnown RBP4.57□□□□□ -1.68
SCFD1-221ENST00000556534 FAM237AA0A1B0GTK4 181 aa4.56□□□□□ -1.68
SCFD1-221ENST00000556534 EME2A4GXA9 379 aaPredicted RBP4.56□□□□□ -1.68
SCFD1-221ENST00000556534 EIF3CLB5ME19 914 aaKnown RBP4.56□□□□□ -1.68
SCFD1-221ENST00000556534 NKX2-2O95096 273 aa4.56□□□□□ -1.68
SCFD1-221ENST00000556534 SPARCP09486 303 aa4.56□□□□□ -1.68
SCFD1-221ENST00000556534 KRT10P13645 584 aa4.56□□□□□ -1.68
SCFD1-221ENST00000556534 MAN1A1P33908 653 aa4.56□□□□□ -1.68
SCFD1-221ENST00000556534 DDIT3P35638 169 aa4.56□□□□□ -1.68
SCFD1-221ENST00000556534 GAS1P54826 345 aa4.56□□□□□ -1.68
SCFD1-221ENST00000556534 HNRNPH2P55795 449 aaKnown RBP4.56□□□□□ -1.68
SCFD1-221ENST00000556534 EEF1A2Q05639 463 aaKnown RBP4.56□□□□□ -1.68
SCFD1-221ENST00000556534 ILF3Q12906 894 aaKnown RBP eCLIP4.56□□□□□ -1.68
SCFD1-221ENST00000556534 CSTF3Q12996 717 aaKnown RBP4.56□□□□□ -1.68
SCFD1-221ENST00000556534 FRG1Q14331 258 aaKnown RBP4.56□□□□□ -1.68
SCFD1-221ENST00000556534 KRT24Q2M2I5 525 aa4.56□□□□□ -1.68
SCFD1-221ENST00000556534 CDONQ4KMG0 1287 aa4.56□□□□□ -1.68
SCFD1-221ENST00000556534 PXKQ7Z7A4 578 aa4.56□□□□□ -1.68
SCFD1-221ENST00000556534 DCP1BQ8IZD4 617 aaKnown RBP4.56□□□□□ -1.68
SCFD1-221ENST00000556534 TEX19Q8NA77 164 aa4.56□□□□□ -1.68
SCFD1-221ENST00000556534 TANKQ92844 425 aa4.56□□□□□ -1.68
SCFD1-221ENST00000556534 SMARCE1Q969G3 411 aa4.56□□□□□ -1.68
SCFD1-221ENST00000556534 IGSF8Q969P0 613 aa4.56□□□□□ -1.68
SCFD1-221ENST00000556534 RRNAD1Q96FB5 475 aaKnown RBP4.56□□□□□ -1.68
SCFD1-221ENST00000556534 IGSF21Q96ID5 467 aa4.56□□□□□ -1.68
SCFD1-221ENST00000556534 POLR1BQ9H9Y6 1135 aa4.56□□□□□ -1.68
SCFD1-221ENST00000556534 FBRSL1Q9HCM7 1045 aaKnown RBP4.56□□□□□ -1.68
SCFD1-221ENST00000556534 MCM9Q9NXL9 1143 aa4.56□□□□□ -1.68
SCFD1-221ENST00000556534 WWOXQ9NZC7 414 aa4.56□□□□□ -1.68
SCFD1-221ENST00000556534 DLGAP2Q9P1A6 1054 aa4.56□□□□□ -1.68
SCFD1-221ENST00000556534 AASSQ9UDR5 926 aa4.56□□□□□ -1.68
SCFD1-221ENST00000556534 MALT1Q9UDY8 824 aa4.56□□□□□ -1.68
SCFD1-221ENST00000556534 ADAM18Q9Y3Q7 739 aa4.56□□□□□ -1.68
SCFD1-221ENST00000556534 PSAT1Q9Y617 370 aa4.56□□□□□ -1.68
SCFD1-221ENST00000556534 KCNE2Q9Y6J6 123 aa4.56□□□□□ -1.68
SCFD1-221ENST00000556534 PIAS3Q9Y6X2 628 aa4.56□□□□□ -1.68
SCFD1-221ENST00000556534 MAGEA13PA6NCF6 341 aa4.55□□□□□ -1.68
SCFD1-221ENST00000556534 ZNF587BE7ETH6 402 aa4.55□□□□□ -1.68
SCFD1-221ENST00000556534 SNRNP70P08621 437 aaKnown RBP4.55□□□□□ -1.68
SCFD1-221ENST00000556534 HSPA1AP0DMV8 641 aaKnown RBP4.55□□□□□ -1.68
SCFD1-221ENST00000556534 HSPA1BP0DMV9 641 aaKnown RBP4.55□□□□□ -1.68
SCFD1-221ENST00000556534 ZNF182P17025 639 aaPredicted RBP4.55□□□□□ -1.68
SCFD1-221ENST00000556534 TNFAIP3P21580 790 aa4.55□□□□□ -1.68
SCFD1-221ENST00000556534 PSMA4P25789 261 aaKnown RBP4.55□□□□□ -1.68
SCFD1-221ENST00000556534 CLCNKAP51800 687 aa4.55□□□□□ -1.68
SCFD1-221ENST00000556534 ERVFC1-1P60608 527 aa4.55□□□□□ -1.68
SCFD1-221ENST00000556534 ZNF280DQ6N043 979 aa4.55□□□□□ -1.68
SCFD1-221ENST00000556534 FAM122CQ6P4D5 195 aa4.55□□□□□ -1.68
SCFD1-221ENST00000556534 SPSB3Q6PJ21 355 aa4.55□□□□□ -1.68
SCFD1-221ENST00000556534 CPLX4Q7Z7G2 160 aa4.55□□□□□ -1.68
SCFD1-221ENST00000556534 UCMAQ8WVF2 138 aa4.55□□□□□ -1.68
SCFD1-221ENST00000556534 WDFY2Q96P53 400 aa4.55□□□□□ -1.68
SCFD1-221ENST00000556534 IL17FQ96PD4 163 aa4.55□□□□□ -1.68
SCFD1-221ENST00000556534 DUX5Q96PT3 197 aa4.55□□□□□ -1.68
SCFD1-221ENST00000556534 ACOX2Q99424 681 aa4.55□□□□□ -1.68
SCFD1-221ENST00000556534 PKP4Q99569 1192 aa4.55□□□□□ -1.68
SCFD1-221ENST00000556534 NAP1L4Q99733 375 aaKnown RBP4.55□□□□□ -1.68
SCFD1-221ENST00000556534 EBF2Q9HAK2 575 aa4.55□□□□□ -1.68
SCFD1-221ENST00000556534 SLC28A3Q9HAS3 691 aa4.55□□□□□ -1.68
SCFD1-221ENST00000556534 SEBOXQ9HB31 216 aaPredicted RBP4.55□□□□□ -1.68
SCFD1-221ENST00000556534 PCDH9Q9HC56 1237 aa4.55□□□□□ -1.68
SCFD1-221ENST00000556534 ORC3Q9UBD5 711 aaPredicted RBP4.55□□□□□ -1.68
SCFD1-221ENST00000556534 TTC7AQ9ULT0 858 aaPredicted RBP4.55□□□□□ -1.68
SCFD1-221ENST00000556534 A0A087X0M5 115 aa4.54□□□□□ -1.68
SCFD1-221ENST00000556534 SAA2-SAA4A0A096LPE2 208 aa4.54□□□□□ -1.68
SCFD1-221ENST00000556534 A0A1B0GX30 115 aa4.54□□□□□ -1.68
SCFD1-221ENST00000556534 GOLGA6L9A6NEM1 432 aa4.54□□□□□ -1.68
SCFD1-221ENST00000556534 PRSS44E7EML9 344 aa4.54□□□□□ -1.68
SCFD1-221ENST00000556534 TULP2O00295 520 aa4.54□□□□□ -1.68
SCFD1-221ENST00000556534 CCNDBP1O95273 360 aa4.54□□□□□ -1.68
SCFD1-221ENST00000556534 MLYCDO95822 493 aa4.54□□□□□ -1.68
SCFD1-221ENST00000556534 BDKRB2P30411 391 aa4.54□□□□□ -1.68
SCFD1-221ENST00000556534 DDX10Q13206 875 aaKnown RBP4.54□□□□□ -1.68
SCFD1-221ENST00000556534 FRG2Q64ET8 278 aa4.54□□□□□ -1.68
SCFD1-221ENST00000556534 RGMBQ6NW40 437 aa4.54□□□□□ -1.68
SCFD1-221ENST00000556534 FAM180BQ6P0A1 224 aa4.54□□□□□ -1.68
SCFD1-221ENST00000556534 GSTA5Q7RTV2 222 aa4.54□□□□□ -1.68
SCFD1-221ENST00000556534 PCDH20Q8N6Y1 951 aaKnown RBP4.54□□□□□ -1.68
SCFD1-221ENST00000556534 FRMD1Q8N878 549 aa4.54□□□□□ -1.68
SCFD1-221ENST00000556534 ZNF441Q8N8Z8 693 aa4.54□□□□□ -1.68
SCFD1-221ENST00000556534 RHBDF1Q96CC6 855 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms