RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 OR2W6PQ8NHA6 318 aa12.5□□□□□ -0.41
SHMT2-214ENST00000554604 GATA6Q92908 595 aa12.5□□□□□ -0.41
SHMT2-214ENST00000554604 WRAP53Q9BUR4 548 aaKnown RBP12.5□□□□□ -0.41
SHMT2-214ENST00000554604 C1QTNF7Q9BXJ2 289 aa12.5□□□□□ -0.41
SHMT2-214ENST00000554604 C1QTNF2Q9BXJ5 285 aa12.5□□□□□ -0.41
SHMT2-214ENST00000554604 SUV39H2Q9H5I1 410 aa12.5□□□□□ -0.41
SHMT2-214ENST00000554604 ATP13A3Q9H7F0 1226 aa12.5□□□□□ -0.41
SHMT2-214ENST00000554604 TOR4AQ9NXH8 423 aa12.5□□□□□ -0.41
SHMT2-214ENST00000554604 ASPMQ8IZT6 3477 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 APC2O95996 2303 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 FAM221BA6H8Z2 402 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 TMEM8BA6NDV4 472 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 AREL1O15033 823 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 RAD51BO15315 384 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 RIPK2O43353 540 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 MMP20O60882 483 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 TM7SF2O76062 418 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 TIMP2P16035 220 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 NR1D1P20393 614 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 AMPD1P23109 780 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 SERPINA4P29622 427 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 SERPINB6P35237 376 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 RABIFP47224 123 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 CDH6P55285 790 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 OTUD4Q01804 1114 aaKnown RBP12.49□□□□□ -0.41
SHMT2-214ENST00000554604 IFFO1Q0D2I5 559 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 RFTN1Q14699 578 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-214ENST00000554604 TRIP13Q15645 432 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-214ENST00000554604 ERAP2Q6P179 960 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 BRAT1Q6PJG6 821 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 KYAT3Q6YP21 454 aaKnown RBP12.49□□□□□ -0.41
SHMT2-214ENST00000554604 SRLQ86TD4 932 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 RFX6Q8HWS3 928 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 CAMK1DQ8IU85 385 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 GALNT15Q8N3T1 639 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 DENND6BQ8NEG7 585 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 ACTL9Q8TC94 416 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 HCAR2Q8TDS4 363 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 ASB12Q8WXK4 309 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 IFT43Q96FT9 208 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 BMFQ96LC9 184 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 ZNF641Q96N77 438 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-214ENST00000554604 LENG8Q96PV6 779 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-214ENST00000554604 CSPG4P5Q96PW8 444 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 TUBGCP5Q96RT8 1024 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 FAM118BQ9BPY3 351 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 DNAJC28Q9NX36 388 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 SEPT3Q9UH03 358 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 DMXL2Q8TDJ6 3036 aa12.49□□□□□ -0.41
SHMT2-214ENST00000554604 SPINT1O43278 529 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 CD48P09326 243 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 DGKAP23743 735 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 CSNK1DP48730 415 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 SCNN1BP51168 640 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 RENBPP51606 427 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 THOP1P52888 689 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 HNRNPKP61978 463 aaKnown RBP eCLIP12.48□□□□□ -0.41
SHMT2-214ENST00000554604 BCL2L1Q07817 233 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 DNAJC3Q13217 504 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 DPYSL3Q14195 570 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 SLC29A2Q14542 456 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 ZNF235Q14590 738 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 MORF4L2Q15014 288 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 NOMO1Q15155 1222 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 UGP2Q16851 508 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 KRT71Q3SY84 523 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 ZNF542PQ5EBM4 170 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 TMCO4Q5TGY1 634 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 KCTD16Q68DU8 428 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 DHRS13Q6UX07 377 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 ARHGAP36Q6ZRI8 547 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 KANSL1Q7Z3B3 1105 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 PCGF5Q86SE9 256 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 SLC22A18ASQ8N1D0 253 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 BBS5Q8N3I7 341 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 ATPAF2Q8N5M1 289 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 NSMCE1Q8WV22 266 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 ZCCHC14Q8WYQ9 949 aaKnown RBP12.48□□□□□ -0.41
SHMT2-214ENST00000554604 VOPP1Q96AW1 172 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 TLCD1Q96CP7 247 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 FAF2Q96CS3 445 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 PGM2Q96G03 612 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 RNF157Q96PX1 679 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 KLF6Q99612 283 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-214ENST00000554604 MAK16Q9BXY0 300 aaKnown RBP12.48□□□□□ -0.41
SHMT2-214ENST00000554604 ROPN1BQ9BZX4 212 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-214ENST00000554604 PHACTR1Q9C0D0 580 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 CDC42EP4Q9H3Q1 356 aaKnown RBP12.48□□□□□ -0.41
SHMT2-214ENST00000554604 ROPN1Q9HAT0 212 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-214ENST00000554604 PCDH18Q9HCL0 1135 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 ETNK2Q9NVF9 386 aa12.48□□□□□ -0.41
SHMT2-214ENST00000554604 ASXL3Q9C0F0 2248 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 ZZEF1O43149 2961 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 DSPP15924 2871 aaKnown RBP12.47□□□□□ -0.41
SHMT2-214ENST00000554604 SPTY2D1-AS1A0A0U1RR47 76 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 NEMP2A6NFY4 417 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 H3BM21 787 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 SMAPO00193 183 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 FFAR2O15552 330 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 PIAS2O75928 621 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms