RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 EI24O14681 340 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 B4GAT1O43505 415 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 SUPT7LO94864 414 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 STAMBPO95630 424 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 SNAI1O95863 264 aaPredicted RBP5.42□□□□□ -1.54
LIMA1-212ENST00000552491 INHBBP09529 407 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 LTA4HP09960 611 aaKnown RBP5.42□□□□□ -1.54
LIMA1-212ENST00000552491 KCNE1P15382 129 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 SMPD1P17405 629 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 CES1P23141 567 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 TPP2P29144 1249 aaPredicted RBP5.42□□□□□ -1.54
LIMA1-212ENST00000552491 ACADVLP49748 655 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 CCT8P50990 548 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 CCR3P51677 355 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 ARSDP51689 593 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 MAPK10P53779 464 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 NAA20P61599 178 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 ESRRGP62508 458 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 CCNA1P78396 465 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 RAB39AQ14964 217 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 ATP6AP1Q15904 470 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 PCSK7Q16549 785 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 FBXO48Q5FWF7 155 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 RAB41Q5JT25 222 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 ZNF678Q5SXM1 525 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 INTS11Q5TA45 600 aaKnown RBP5.42□□□□□ -1.54
LIMA1-212ENST00000552491 HECTD2Q5U5R9 776 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 TBPL2Q6SJ96 375 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 TOP6BLQ8N6T0 577 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 SMG8Q8ND04 991 aaKnown RBP5.42□□□□□ -1.54
LIMA1-212ENST00000552491 OR13J1Q8NGT2 312 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 CCDC126Q96EE4 140 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 C19orf60Q96EN9 201 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 TEX37Q96LM6 180 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 NSUN5Q96P11 429 aaKnown RBP5.42□□□□□ -1.54
LIMA1-212ENST00000552491 UPF3AQ9H1J1 476 aaKnown RBP5.42□□□□□ -1.54
LIMA1-212ENST00000552491 HIPK3Q9H422 1215 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 TUBB1Q9H4B7 451 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 CXorf21Q9HAI6 301 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 SLC52A3Q9NQ40 469 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 POLR3BQ9NW08 1133 aaPredicted RBP5.42□□□□□ -1.54
LIMA1-212ENST00000552491 MARCH4Q9P2E8 410 aaPredicted RBP5.42□□□□□ -1.54
LIMA1-212ENST00000552491 ZNF711Q9Y462 761 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 CSADQ9Y600 493 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 ASB14A6NK59 587 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 H0Y858 1186 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 ARPC2O15144 300 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 SUPT3HO75486 399 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 CDK14O94921 469 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 MMP3P08254 477 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 NCK1P16333 377 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 IMPDH1P20839 514 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 CCNCP24863 283 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 PNPLA4P41247 253 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 LEPRP48357 1165 aaKnown RBP5.42□□□□□ -1.54
LIMA1-212ENST00000552491 ZNF135P52742 658 aaPredicted RBP5.42□□□□□ -1.54
LIMA1-212ENST00000552491 SLC12A2P55011 1212 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 TIAL1Q01085 375 aaKnown RBP eCLIP5.42□□□□□ -1.54
LIMA1-212ENST00000552491 GALNT1Q10472 559 aaPredicted RBP5.42□□□□□ -1.54
LIMA1-212ENST00000552491 BNIP3Q12983 259 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 TGFBIQ15582 683 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 SLC14A2Q15849 920 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 ZNF792Q3KQV3 632 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 ARL13BQ3SXY8 428 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 CYBRD1Q53TN4 286 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 RABL3Q5HYI8 236 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 OGFOD2Q6N063 350 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 NANOGP8Q6NSW7 305 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 DCLRE1AQ6PJP8 1040 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 SPRED1Q7Z699 444 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 PATL1Q86TB9 770 aaKnown RBP5.42□□□□□ -1.54
LIMA1-212ENST00000552491 CAMK1DQ8IU85 385 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 ATPAF2Q8N5M1 289 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 C3orf58Q8NDZ4 430 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 DNAJB3Q8WWF6 145 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 CYGBQ8WWM9 190 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 SGCDQ92629 289 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 EXT2Q93063 718 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 HDAC10Q969S8 669 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 ZUFSPQ96AP4 578 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 ROPN1LQ96C74 230 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 SENP8Q96LD8 212 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 DOK1Q99704 481 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 PAIP1Q9H074 479 aaKnown RBP5.42□□□□□ -1.54
LIMA1-212ENST00000552491 POLR1BQ9H9Y6 1135 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 CNGB3Q9NQW8 809 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 TLR9Q9NR96 1032 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 RBM22Q9NW64 420 aaKnown RBP eCLIP5.42□□□□□ -1.54
LIMA1-212ENST00000552491 SLAMF8Q9P0V8 285 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 DOLKQ9UPQ8 538 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 IPPQ9Y573 584 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 KCTD3Q9Y597 815 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 PPP2R3BQ9Y5P8 575 aa5.42□□□□□ -1.54
LIMA1-212ENST00000552491 RNF103-CHMP3A0A140T963 221 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 TCRBV5S2A0A599 114 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 RBM47A0AV96 593 aaKnown RBP5.41□□□□□ -1.54
LIMA1-212ENST00000552491 ASPDHA6ND91 283 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 TRIM64BA6NI03 449 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 AQP12BA6NM10 295 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 RNF223E7ERA6 249 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms