RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	PPIG	Q13427	754 aa	Known RBP eCLIP	4.24	□□□□□ -1.73
USP44-208	ENST00000552440	DOC2A	Q14183	400 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	KARS	Q15046	597 aa	Known RBP	4.24	□□□□□ -1.73
USP44-208	ENST00000552440	HERC4	Q5GLZ8	1057 aa	Predicted RBP	4.24	□□□□□ -1.73
USP44-208	ENST00000552440	MDH1B	Q5I0G3	518 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	FAM171A1	Q5VUB5	890 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	SFMBT2	Q5VUG0	894 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	AP1AR	Q63HQ0	302 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	PLA2G4F	Q68DD2	849 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	ARHGAP17	Q68EM7	881 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	KLC3	Q6P597	504 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	TRIM72	Q6ZMU5	477 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	CLEC17A	Q6ZS10	378 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	USP30	Q70CQ3	517 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	AMZ2	Q86W34	360 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	ZNF679	Q8IYX0	411 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	AADAT	Q8N5Z0	425 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	FAM184A	Q8NB25	1140 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	AGBL3	Q8NEM8	1001 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	OR8K5	Q8NH50	307 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	OR8K3	Q8NH51	312 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	TEKT4	Q8WW24	435 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	LPP	Q93052	612 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	SLAMF9	Q96A28	289 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	SLC7A6OS	Q96CW6	309 aa	Predicted RBP	4.24	□□□□□ -1.73
USP44-208	ENST00000552440	REXO5	Q96IC2	774 aa	Known RBP	4.24	□□□□□ -1.73
USP44-208	ENST00000552440	LRIG1	Q96JA1	1093 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	GAL3ST1	Q99999	423 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	4.24	□□□□□ -1.73
USP44-208	ENST00000552440	TLR10	Q9BXR5	811 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	SLC46A2	Q9BY10	475 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	ENKD1	Q9H0I2	346 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	CARD9	Q9H257	536 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	HRH4	Q9H3N8	390 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	TFB2M	Q9H5Q4	396 aa	Known RBP	4.24	□□□□□ -1.73
USP44-208	ENST00000552440	ZNF703	Q9H7S9	590 aa	Predicted RBP	4.24	□□□□□ -1.73
USP44-208	ENST00000552440	PALMD	Q9NP74	551 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	FAM114A2	Q9NRY5	505 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	DNAJC11	Q9NVH1	559 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	DNAJC17	Q9NVM6	304 aa	Known RBP	4.24	□□□□□ -1.73
USP44-208	ENST00000552440	P4HTM	Q9NXG6	502 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	UBAP1	Q9NZ09	502 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	GDE1	Q9NZC3	331 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	ATP6V1H	Q9UI12	483 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	IPO11	Q9UI26	975 aa	Known RBP	4.24	□□□□□ -1.73
USP44-208	ENST00000552440	PRDM4	Q9UKN5	801 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	SNX6	Q9UNH7	406 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	PCDHA10	Q9Y5I2	948 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	ACE	P12821	1306 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440		A0A087WV48	116 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	AGAP5	A6NIR3	686 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	ZNF785	A8K8V0	405 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	EIF3CL	B5ME19	914 aa	Known RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	NRP1	O14786	923 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	SLC30A4	O14863	429 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	CASC3	O15234	703 aa	Known RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	CACNG3	O60359	315 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	IL1A	P01583	271 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	LMNA	P02545	664 aa	Known RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	JUN	P05412	331 aa	Known RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	FGF4	P08620	206 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	DLAT	P10515	647 aa	Known RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	ATP5J	P18859	108 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	PSMA5	P28066	241 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	HOXA13	P31271	388 aa	Predicted RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	OR1G1	P47890	313 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	CAMP	P49913	170 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	ZNF135	P52742	658 aa	Predicted RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	PRRX1	P54821	245 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	FAM3B	P58499	235 aa	Predicted RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	ADAM8	P78325	824 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	TFAP4	Q01664	338 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	GOLGA8F	Q08AF8	430 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	IK	Q13123	557 aa	Predicted RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	PREPL	Q4J6C6	727 aa	Predicted RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	FASTKD1	Q53R41	847 aa	Known RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	ARHGAP40	Q5TG30	622 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	TMEM81	Q6P7N7	255 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	PAPD4	Q6PIY7	484 aa	Known RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440		Q6ZSN1	163 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	GPRIN1	Q7Z2K8	1008 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	TRAPPC11	Q7Z392	1133 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	SLC46A3	Q7Z3Q1	461 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	SYVN1	Q86TM6	617 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	CAND1	Q86VP6	1230 aa	Known RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	SPATA24	Q86W54	205 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	NLGN4Y	Q8NFZ3	816 aa	Predicted RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	SLC35B2	Q8TB61	432 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	MIPOL1	Q8TD10	442 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	EXTL1	Q92935	676 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	ARRDC3	Q96B67	414 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	DHX58	Q96C10	678 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	PIWIL1	Q96J94	861 aa	Known RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	PRICKLE1	Q96MT3	831 aa	Predicted RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	PLEKHG4B	Q96PX9	1271 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	OR14A2	Q96R54	314 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	MPHOSPH9	Q99550	1183 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	HNRNPAB	Q99729	332 aa	Known RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	GLIS2	Q9BZE0	524 aa	Predicted RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	OSBPL8	Q9BZF1	889 aa		4.23	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms