RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 PAQR3Q6TCH7 311 aa15.03■□□□□ -0
USP28-214ENST00000545540 TRPV1Q8NER1 839 aa15.03■□□□□ -0
USP28-214ENST00000545540 TRMT13Q9NUP7 481 aaKnown RBP15.03■□□□□ -0
USP28-214ENST00000545540 POLR3BQ9NW08 1133 aaPredicted RBP15.03■□□□□ -0
USP28-214ENST00000545540 TRPV2Q9Y5S1 764 aa15.03■□□□□ -0
USP28-214ENST00000545540 HTRA2O43464 458 aaPredicted RBP15.03■□□□□ -0
USP28-214ENST00000545540 PCNAP12004 261 aa15.03■□□□□ -0
USP28-214ENST00000545540 OR1E1P30953 314 aa15.03■□□□□ -0
USP28-214ENST00000545540 LEPRP48357 1165 aaKnown RBP15.03■□□□□ -0
USP28-214ENST00000545540 TBX4P57082 545 aa15.03■□□□□ -0
USP28-214ENST00000545540 POLD3Q15054 466 aaPredicted RBP15.03■□□□□ -0
USP28-214ENST00000545540 TSNQ15631 228 aaKnown RBP15.03■□□□□ -0
USP28-214ENST00000545540 C18orf21Q32NC0 220 aaPredicted RBP15.03■□□□□ -0
USP28-214ENST00000545540 LRRC23Q53EV4 343 aaPredicted RBP15.03■□□□□ -0
USP28-214ENST00000545540 RALGPS2Q86X27 583 aaPredicted RBP15.03■□□□□ -0
USP28-214ENST00000545540 SLC30A3Q99726 388 aa15.03■□□□□ -0
USP28-214ENST00000545540 SLC25A51Q9H1U9 297 aa15.03■□□□□ -0
USP28-214ENST00000545540 OLAHQ9NV23 265 aa15.03■□□□□ -0
USP28-214ENST00000545540 NT5C1B-RDH14C9J2C7 533 aa15.02■□□□□ -0
USP28-214ENST00000545540 LDB2O43679 373 aa15.02■□□□□ -0
USP28-214ENST00000545540 OR1I1O60431 355 aa15.02■□□□□ -0
USP28-214ENST00000545540 IGLV3-25P01717 112 aa15.02■□□□□ -0
USP28-214ENST00000545540 IMPDH1P20839 514 aa15.02■□□□□ -0
USP28-214ENST00000545540 TIAL1Q01085 375 aaKnown RBP eCLIP15.02■□□□□ -0
USP28-214ENST00000545540 TAF1CQ15572 869 aaPredicted RBP15.02■□□□□ -0
USP28-214ENST00000545540 ZIK1Q3SY52 487 aaPredicted RBP15.02■□□□□ -0
USP28-214ENST00000545540 UGT3A2Q3SY77 523 aa15.02■□□□□ -0
USP28-214ENST00000545540 C10orf120Q5SQS8 335 aa15.02■□□□□ -0
USP28-214ENST00000545540 IMP4Q96G21 291 aaKnown RBP15.02■□□□□ -0
USP28-214ENST00000545540 NSMCE3Q96MG7 304 aa15.02■□□□□ -0
USP28-214ENST00000545540 ZBED2Q9BTP6 218 aa15.02■□□□□ -0
USP28-214ENST00000545540 LTB4R2Q9NPC1 389 aa15.02■□□□□ -0
USP28-214ENST00000545540 IRAK4Q9NWZ3 460 aa15.02■□□□□ -0
USP28-214ENST00000545540 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.02■□□□□ -0
USP28-214ENST00000545540 MAGED1Q9Y5V3 778 aaPredicted RBP15.02■□□□□ -0
USP28-214ENST00000545540 TNFRSF10BO14763 440 aa15.02■□□□□ -0
USP28-214ENST00000545540 PSMD3O43242 534 aa15.02■□□□□ -0
USP28-214ENST00000545540 B4GAT1O43505 415 aa15.02■□□□□ -0
USP28-214ENST00000545540 SLC2A3P11169 496 aa15.02■□□□□ -0
USP28-214ENST00000545540 EEF1DP29692 281 aaKnown RBP15.02■□□□□ -0
USP28-214ENST00000545540 RGS2P41220 211 aa15.02■□□□□ -0
USP28-214ENST00000545540 RENBPP51606 427 aa15.02■□□□□ -0
USP28-214ENST00000545540 KCNQ1P51787 676 aa15.02■□□□□ -0
USP28-214ENST00000545540 TMED1Q13445 227 aa15.02■□□□□ -0
USP28-214ENST00000545540 OTUD3Q5T2D3 398 aaPredicted RBP15.02■□□□□ -0
USP28-214ENST00000545540 MANEALQ5VSG8 457 aa15.02■□□□□ -0
USP28-214ENST00000545540 CHERPQ8IWX8 916 aaKnown RBP15.02■□□□□ -0
USP28-214ENST00000545540 GIPC2Q8TF65 315 aa15.02■□□□□ -0
USP28-214ENST00000545540 RMDN1Q96DB5 314 aa15.02■□□□□ -0
USP28-214ENST00000545540 RANBP9Q96S59 729 aa15.02■□□□□ -0
USP28-214ENST00000545540 MRPS26Q9BYN8 205 aaKnown RBP15.02■□□□□ -0
USP28-214ENST00000545540 RBM38Q9H0Z9 239 aaKnown RBP15.02■□□□□ -0
USP28-214ENST00000545540 PCDH10Q9P2E7 1040 aa15.02■□□□□ -0
USP28-214ENST00000545540 BCAP29Q9UHQ4 241 aa15.02■□□□□ -0
USP28-214ENST00000545540 OAZ3Q9UMX2 235 aa15.02■□□□□ -0
USP28-214ENST00000545540 NYNRINQ9P2P1 1898 aaKnown RBP15.02□□□□□ -0.01
USP28-214ENST00000545540 ANGPT2O15123 496 aa15.02□□□□□ -0.01
USP28-214ENST00000545540 CD3EAPO15446 510 aaKnown RBP15.02□□□□□ -0.01
USP28-214ENST00000545540 CLASP2O75122 1294 aaKnown RBP15.02□□□□□ -0.01
USP28-214ENST00000545540 RBP1P09455 135 aa15.02□□□□□ -0.01
USP28-214ENST00000545540 GPX3P22352 226 aa15.02□□□□□ -0.01
USP28-214ENST00000545540 ACAP2Q15057 778 aa15.02□□□□□ -0.01
USP28-214ENST00000545540 SLC15A3Q8IY34 581 aa15.02□□□□□ -0.01
USP28-214ENST00000545540 AHI1Q8N157 1196 aa15.02□□□□□ -0.01
USP28-214ENST00000545540 OR7D4Q8NG98 312 aa15.02□□□□□ -0.01
USP28-214ENST00000545540 SLC25A23Q9BV35 468 aa15.02□□□□□ -0.01
USP28-214ENST00000545540 ARHGAP39Q9C0H5 1083 aa15.02□□□□□ -0.01
USP28-214ENST00000545540 SMOXQ9NWM0 555 aa15.02□□□□□ -0.01
USP28-214ENST00000545540 CMTM6Q9NX76 183 aa15.02□□□□□ -0.01
USP28-214ENST00000545540 RRN3Q9NYV6 651 aa15.02□□□□□ -0.01
USP28-214ENST00000545540 EBF1Q9UH73 591 aa15.02□□□□□ -0.01
USP28-214ENST00000545540 SLC12A8A0AV02 714 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 CDH2P19022 906 aaPredicted RBP15.01□□□□□ -0.01
USP28-214ENST00000545540 PIK3CGP48736 1102 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 SCNN1BP51168 640 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 FRG1Q14331 258 aaKnown RBP15.01□□□□□ -0.01
USP28-214ENST00000545540 HERC3Q15034 1050 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 SPRYD7Q5W111 196 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 THEM5Q8N1Q8 247 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 EFHBQ8N7U6 833 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 DLG3Q92796 817 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 SMOC2Q9H3U7 446 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 VPS45Q9NRW7 570 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 TBC1D13Q9NVG8 400 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 DUS2Q9NX74 493 aaKnown RBP15.01□□□□□ -0.01
USP28-214ENST00000545540 CD300AQ9UGN4 299 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 CEPT1Q9Y6K0 416 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 NUP214P35658 2090 aaPredicted RBP15.01□□□□□ -0.01
USP28-214ENST00000545540 GLP2RO95838 553 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 HSPA1AP0DMV8 641 aaKnown RBP15.01□□□□□ -0.01
USP28-214ENST00000545540 HSPA1BP0DMV9 641 aaKnown RBP15.01□□□□□ -0.01
USP28-214ENST00000545540 MTHFD2P13995 350 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 CD1DP15813 335 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 RGRP47804 291 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 LPCAT2Q7L5N7 544 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 SEPT5Q99719 369 aaPredicted RBP15.01□□□□□ -0.01
USP28-214ENST00000545540 CCSER2Q9H7U1 834 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 THEGQ9P2T0 379 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 CDC14AQ9UNH5 594 aa15.01□□□□□ -0.01
USP28-214ENST00000545540 RHOBTB1O94844 696 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms