RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 NBNO60934 754 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 PEX14O75381 377 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 SERPINB7O75635 380 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 ZNF682O95780 498 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 DARSP14868 501 aaKnown RBP7.82□□□□□ -1.16
VPS13D-211ENST00000543710 S100A1P23297 94 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 RARRES1P49788 294 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 PAMR1Q6UXH9 720 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 FBXO25Q8TCJ0 367 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 MYLIPQ8WY64 445 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 RNFT2Q96EX2 444 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 CRELD1Q96HD1 420 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 CDHR5Q9HBB8 845 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 C14orf105Q9NVL8 296 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 INTS10Q9NVR2 710 aaKnown RBP7.82□□□□□ -1.16
VPS13D-211ENST00000543710 SNTG2Q9NY99 539 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP7.82□□□□□ -1.16
VPS13D-211ENST00000543710 TNFRSF10AO00220 468 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 ALDH9A1P49189 494 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 RFTN1Q14699 578 aaPredicted RBP7.82□□□□□ -1.16
VPS13D-211ENST00000543710 TYSND1Q2T9J0 566 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 ZNF618Q5T7W0 954 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 SYT12Q8IV01 421 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.82□□□□□ -1.16
VPS13D-211ENST00000543710 FAM81AQ8TBF8 368 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 WFIKKN2Q8TEU8 576 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 FIG4Q92562 907 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 PSME2Q9UL46 239 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 PSMD13Q9UNM6 376 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 KDM3BQ7LBC6 1761 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 ZBTB39O15060 712 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 DGKIO75912 1065 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 DNAJB5O75953 348 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 CPSF4O95639 269 aaKnown RBP7.82□□□□□ -1.16
VPS13D-211ENST00000543710 STAU1O95793 577 aaKnown RBP7.82□□□□□ -1.16
VPS13D-211ENST00000543710 PLEKP08567 350 aaPredicted RBP7.82□□□□□ -1.16
VPS13D-211ENST00000543710 NFICP08651 508 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 GSTT2BP0CG30 244 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 CAPGP40121 348 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 PSME3P61289 254 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 TOMM20Q15388 145 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 FAM189A2Q15884 450 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 CMPK2Q5EBM0 449 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 PAOXQ6QHF9 649 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 TMC5Q6UXY8 1006 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 KIAA0408Q6ZU52 694 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 SV2AQ7L0J3 742 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 TAS1R3Q7RTX0 852 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 PGAM4Q8N0Y7 254 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 EMC1Q8N766 993 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 ANKRD52Q8NB46 1076 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 RNF157Q96PX1 679 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 PSKH2Q96QS6 385 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 S100A14Q9HCY8 104 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 MKS1Q9NXB0 559 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 PCDHGB1Q9Y5G3 927 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 LRP6O75581 1613 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 LOC100653049A0A140TA62 436 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 GNG14A0A1W2PPG7 69 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 DDX3YO15523 660 aaKnown RBP7.82□□□□□ -1.16
VPS13D-211ENST00000543710 ZNF217O75362 1048 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 SERPINA3P01011 423 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 COX7A2P14406 83 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 UGT1A5P35504 534 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 NDST1P52848 882 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 BOP1Q14137 746 aaKnown RBP7.82□□□□□ -1.16
VPS13D-211ENST00000543710 KSR1Q8IVT5 923 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 SLC4A11Q8NBS3 891 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 CHCHD6Q9BRQ6 235 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 ACTR8Q9H981 624 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 NT5MQ9NPB1 228 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 CA14Q9ULX7 337 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 SSR3Q9UNL2 185 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 SLC9A8Q9Y2E8 581 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 HEBP2Q9Y5Z4 205 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 PTPRJQ12913 1337 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 A0A1W2PQ45 241 aaPredicted RBP7.81□□□□□ -1.16
VPS13D-211ENST00000543710 A0A1W2PQY0 241 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 MDM4O15151 490 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 CCNT2O60583 730 aaKnown RBP7.81□□□□□ -1.16
VPS13D-211ENST00000543710 MTRF1O75570 445 aaKnown RBP7.81□□□□□ -1.16
VPS13D-211ENST00000543710 KLK3P07288 261 aaPredicted RBP7.81□□□□□ -1.16
VPS13D-211ENST00000543710 CCDC166P0CW27 439 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 ARP10275 920 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 MAPKAPK2P49137 400 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 CYP1B1Q16678 543 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 GLRA4Q5JXX5 417 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 GALNT13Q8IUC8 556 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 GLB1L3Q8NCI6 653 aaPredicted RBP7.81□□□□□ -1.16
VPS13D-211ENST00000543710 OR7A2PQ8NGA2 310 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 GRPEL2Q8TAA5 225 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 PLD4Q96BZ4 506 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 MTMR8Q96EF0 704 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 MYO19Q96H55 970 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 TRIB3Q96RU7 358 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 NXF3Q9H4D5 531 aaKnown RBP7.81□□□□□ -1.16
VPS13D-211ENST00000543710 BLOC1S4Q9NUP1 217 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 MKLN1Q9UL63 735 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 COL2A1P02458 1487 aaPredicted RBP7.81□□□□□ -1.16
VPS13D-211ENST00000543710 CASTOR2A6NHX0 329 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms