RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 ETV3P41162 512 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 GARSP41250 739 aaKnown RBP13.11□□□□□ -0.31
RTN3-212ENST00000543123 EPHB1P54762 984 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 MAXP61244 160 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 CDK3Q00526 305 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 DPTQ07507 201 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 GALNT2Q10471 571 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 HLTFQ14527 1009 aaKnown RBP eCLIP13.11□□□□□ -0.31
RTN3-212ENST00000543123 PDK2Q15119 407 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 IFI16Q16666 785 aaKnown RBP13.11□□□□□ -0.31
RTN3-212ENST00000543123 CLPPQ16740 277 aaPredicted RBP13.11□□□□□ -0.31
RTN3-212ENST00000543123 TAF1BQ53T94 588 aaPredicted RBP13.11□□□□□ -0.31
RTN3-212ENST00000543123 TXNRD3NBQ6F5E7 133 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 SPRED1Q7Z699 444 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 Q8N9G6 341 aaPredicted RBP13.11□□□□□ -0.31
RTN3-212ENST00000543123 KCTD6Q8NC69 237 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 FAM71BQ8TC56 605 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 GPBAR1Q8TDU6 330 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 PRR11Q96HE9 360 aaPredicted RBP13.11□□□□□ -0.31
RTN3-212ENST00000543123 BTBD6Q96KE9 485 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 ZNF830Q96NB3 372 aaPredicted RBP13.11□□□□□ -0.31
RTN3-212ENST00000543123 SEMA3CQ99985 751 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 ANP32EQ9BTT0 268 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 LGR4Q9BXB1 951 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 CDH19Q9H159 772 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 CPNE5Q9HCH3 593 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 AKAP7Q9P0M2 348 aaPredicted RBP13.11□□□□□ -0.31
RTN3-212ENST00000543123 CTTNBP2NLQ9P2B4 639 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 LRIT1Q9P2V4 623 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 RABGEF1Q9UJ41 708 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 PPIL1Q9Y3C6 166 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 A0A1W2PQM1 296 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 TTC24A2A3L6 582 aaPredicted RBP13.1□□□□□ -0.31
RTN3-212ENST00000543123 RHPN2P1A8MT19 583 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 MFSD11O43934 449 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 NOBOXO60393 691 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 GYPCP04921 128 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 IVLP07476 585 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 H2AFZP0C0S5 128 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 LHCGRP22888 699 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 UGT1A5P35504 534 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 GJC1P36383 396 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 GPR1P46091 355 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 GNPDA1P46926 289 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 DPYSL3Q14195 570 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 PAFAH1B3Q15102 231 aaKnown RBP13.1□□□□□ -0.31
RTN3-212ENST00000543123 MAP9Q49MG5 647 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 ARHGAP40Q5TG30 622 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 KCTD16Q68DU8 428 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 ADAMTSL4Q6UY14 1074 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 H2AFVQ71UI9 128 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 ZNF765Q7L2R6 523 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 HSD11B1LQ7Z5J1 315 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 B3GNT8Q7Z7M8 397 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 JAMLQ86YT9 394 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 RAVER1Q8IY67 606 aaKnown RBP13.1□□□□□ -0.31
RTN3-212ENST00000543123 SNRNP27Q8WVK2 155 aaKnown RBP13.1□□□□□ -0.31
RTN3-212ENST00000543123 NSMCE3Q96MG7 304 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 CMKLR1Q99788 373 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 FRMD8Q9BZ67 464 aaPredicted RBP13.1□□□□□ -0.31
RTN3-212ENST00000543123 FOXP3Q9BZS1 431 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 DEF6Q9H4E7 631 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 IFNKQ9P0W0 207 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 TTLL3Q9Y4R7 772 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 RNF215Q9Y6U7 377 aa13.1□□□□□ -0.31
RTN3-212ENST00000543123 MATN3O15232 486 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 PROSCO94903 275 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 CPNE6O95741 557 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 CEACAM5P06731 702 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 TPM1P09493 284 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 CTPS1P17812 591 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 IL4RP24394 825 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 CCNCP24863 283 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 MAN1A1P33908 653 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 RPL26P61254 145 aaKnown RBP13.09□□□□□ -0.31
RTN3-212ENST00000543123 MMRN1Q13201 1228 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 TRIM14Q14142 442 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 ZFYVE27Q5T4F4 411 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 LRRC66Q68CR7 880 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 NCBP2-AS2Q69YL0 99 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 ALG1LQ6GMV1 187 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 CCDC81Q6ZN84 652 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 Q6ZVL8 140 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 PIM3Q86V86 326 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 NRSN1Q8IZ57 195 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 CBARPQ8N350 705 aaPredicted RBP13.09□□□□□ -0.31
RTN3-212ENST00000543123 ZDHHC1Q8WTX9 485 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 MAML1Q92585 1016 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 AP2M1Q96CW1 435 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 TSGA13Q96PP4 275 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 SUDS3Q9H7L9 328 aaPredicted RBP13.09□□□□□ -0.31
RTN3-212ENST00000543123 ZNHIT6Q9NWK9 470 aaKnown RBP13.09□□□□□ -0.31
RTN3-212ENST00000543123 TAAR2Q9P1P5 351 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 ACSL6Q9UKU0 697 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 ATXN7L1Q9ULK2 861 aaPredicted RBP13.09□□□□□ -0.31
RTN3-212ENST00000543123 SUFUQ9UMX1 484 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 RPL26L1Q9UNX3 145 aaKnown RBP13.09□□□□□ -0.31
RTN3-212ENST00000543123 SLC17A4Q9Y2C5 497 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 SSUH2Q9Y2M2 353 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 LOXL2Q9Y4K0 774 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms