RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 EML4Q9HC35 981 aaKnown RBP13.77□□□□□ -0.21
RTN3-210ENST00000540798 TNFRSF12AQ9NP84 129 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 SPG21Q9NZD8 308 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 RAI2Q9Y5P3 530 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 SCN8AQ9UQD0 1980 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 RGSL1A5PLK6 1076 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 FZD6O60353 706 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 TMCC1O94876 653 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 C1RP00736 705 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 THRAP10827 490 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 CD1EP15812 388 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 DEFB103AP81534 67 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 ZNF678Q5SXM1 525 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 GLT6D1Q7Z4J2 308 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 RP9Q8TA86 221 aaKnown RBP13.77□□□□□ -0.21
RTN3-210ENST00000540798 SHKBP1Q8TBC3 707 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 ZBED2Q9BTP6 218 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 ALG9Q9H6U8 611 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 CDH22Q9UJ99 828 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 NEMP1O14524 444 aa13.76□□□□□ -0.21
RTN3-210ENST00000540798 URODP06132 367 aa13.76□□□□□ -0.21
RTN3-210ENST00000540798 HNRNPLP14866 589 aaKnown RBP eCLIP13.76□□□□□ -0.212e-12■■■□□ 15.2
RTN3-210ENST00000540798 CD9P21926 228 aa13.76□□□□□ -0.21
RTN3-210ENST00000540798 EPHB3P54753 998 aa13.76□□□□□ -0.21
RTN3-210ENST00000540798 TRAF2Q12933 501 aa13.76□□□□□ -0.21
RTN3-210ENST00000540798 OR4K2Q8NGD2 314 aa13.76□□□□□ -0.21
RTN3-210ENST00000540798 STMN2Q93045 179 aa13.76□□□□□ -0.21
RTN3-210ENST00000540798 MUC3BQ9H195 1237 aa13.76□□□□□ -0.21
RTN3-210ENST00000540798 ZBTB26Q9HCK0 441 aa13.76□□□□□ -0.21
RTN3-210ENST00000540798 HELZP42694 1942 aaKnown RBP13.76□□□□□ -0.21
RTN3-210ENST00000540798 ANKRD66B4E2M5 251 aa13.76□□□□□ -0.21
RTN3-210ENST00000540798 H7C0S8 307 aa13.76□□□□□ -0.21
RTN3-210ENST00000540798 PRSS56P0CW18 603 aa13.76□□□□□ -0.21
RTN3-210ENST00000540798 MBL2P11226 248 aaPredicted RBP13.76□□□□□ -0.21
RTN3-210ENST00000540798 SMAD3P84022 425 aaKnown RBP13.76□□□□□ -0.21
RTN3-210ENST00000540798 PDCD2Q16342 344 aaPredicted RBP13.76□□□□□ -0.21
RTN3-210ENST00000540798 TAF12Q16514 161 aa13.76□□□□□ -0.21
RTN3-210ENST00000540798 SPOUT1Q5T280 376 aaKnown RBP13.76□□□□□ -0.21
RTN3-210ENST00000540798 C6orf163Q5TEZ5 329 aa13.76□□□□□ -0.21
RTN3-210ENST00000540798 TMCO2Q7Z6W1 182 aaPredicted RBP13.76□□□□□ -0.21
RTN3-210ENST00000540798 CUZD1Q86UP6 607 aa13.76□□□□□ -0.21
RTN3-210ENST00000540798 TTC30BQ8N4P2 665 aa13.76□□□□□ -0.21
RTN3-210ENST00000540798 HJURPQ8NCD3 748 aaPredicted RBP13.76□□□□□ -0.21
RTN3-210ENST00000540798 RMDN1Q96DB5 314 aa13.76□□□□□ -0.21
RTN3-210ENST00000540798 FEM1AQ9BSK4 669 aa13.76□□□□□ -0.21
RTN3-210ENST00000540798 TFB2MQ9H5Q4 396 aaKnown RBP13.76□□□□□ -0.21
RTN3-210ENST00000540798 CYP4F12Q9HCS2 524 aa13.76□□□□□ -0.21
RTN3-210ENST00000540798 SPATS2LQ9NUQ6 558 aaKnown RBP13.76□□□□□ -0.21
RTN3-210ENST00000540798 LOC100653049A0A140TA62 436 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 C2orf81A6NN90 581 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 UBFD1O14562 309 aaKnown RBP13.75□□□□□ -0.21
RTN3-210ENST00000540798 PRRG1O14668 218 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 SNAP91O60641 907 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 TBL1XO60907 577 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 KRT34O76011 436 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 LUC7L3O95232 432 aaKnown RBP13.75□□□□□ -0.21
RTN3-210ENST00000540798 MZF1P28698 734 aaPredicted RBP13.75□□□□□ -0.21
RTN3-210ENST00000540798 VHLP40337 213 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 CUL3Q13618 768 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 UNC50Q53HI1 259 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 ATOH8Q96SQ7 321 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 CYP2S1Q96SQ9 504 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 ADGRE3Q9BY15 652 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 HSPA1AP0DMV8 641 aaKnown RBP13.75□□□□□ -0.21
RTN3-210ENST00000540798 HSPA1BP0DMV9 641 aaKnown RBP13.75□□□□□ -0.21
RTN3-210ENST00000540798 MTHFD2P13995 350 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 LPOP22079 712 aaPredicted RBP13.75□□□□□ -0.21
RTN3-210ENST00000540798 MTTPP55157 894 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 HERVK_113P63132 956 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 PEX6Q13608 980 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 C1orf146Q5VVC0 180 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 TMEM198Q66K66 360 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 AAGABQ6PD74 315 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 DNAJC14Q6Y2X3 702 aaPredicted RBP13.75□□□□□ -0.21
RTN3-210ENST00000540798 LPCAT1Q8NF37 534 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 SPDL1Q96EA4 605 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 SMIM14Q96QK8 99 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 ERVK-6Q9BXR3 956 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 TMEM39AQ9NV64 488 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 VPS28Q9UK41 221 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 PCDHGC4Q9Y5F7 938 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 COPG1Q9Y678 874 aaKnown RBP13.75□□□□□ -0.21
RTN3-210ENST00000540798 H3BMM5 538 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 CLTBP09497 229 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 WDR5P61964 334 aaKnown RBP13.75□□□□□ -0.21
RTN3-210ENST00000540798 OR4D1Q15615 310 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 ITIH5Q86UX2 942 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 DEFB107AQ8IZN7 70 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 CEP70Q8NHQ1 597 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 DIS3LQ8TF46 1054 aaKnown RBP13.75□□□□□ -0.21
RTN3-210ENST00000540798 AUTS2Q8WXX7 1259 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 RSRC1Q96IZ7 334 aaKnown RBP13.75□□□□□ -0.21
RTN3-210ENST00000540798 ZNF333Q96JL9 665 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 PPP1R36Q96LQ0 422 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 BIRC8Q96P09 236 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 DERL2Q9GZP9 239 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.75□□□□□ -0.21
RTN3-210ENST00000540798 SMPD4Q9NXE4 827 aa13.75□□□□□ -0.21
RTN3-210ENST00000540798 OAS3Q9Y6K5 1087 aaKnown RBP13.75□□□□□ -0.21
RTN3-210ENST00000540798 TEX28O15482 410 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms