RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 CARNMT1Q8N4J0 409 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 SPDYE1Q8NFV5 336 aaPredicted RBP16.9■□□□□ 0.3
USP28-208ENST00000540438 GATA6Q92908 595 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 FAM8A1Q9UBU6 413 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 USP22Q9UPT9 525 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 COMMD10Q9Y6G5 202 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 MYO15AQ9UKN7 3530 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 NUP214P35658 2090 aaPredicted RBP16.9■□□□□ 0.3
USP28-208ENST00000540438 KRT87PA6NCN2 255 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 SLC38A8A6NNN8 435 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 SRP72O76094 671 aaKnown RBP16.9■□□□□ 0.3
USP28-208ENST00000540438 APOA4P06727 396 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 VCLP18206 1134 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 MZF1P28698 734 aaPredicted RBP16.9■□□□□ 0.3
USP28-208ENST00000540438 PSME3P61289 254 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 FOLH1Q04609 750 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 TRIP4Q15650 581 aaPredicted RBP16.9■□□□□ 0.3
USP28-208ENST00000540438 KBTBD6Q86V97 674 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 OR4L1Q8NH43 312 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 TUBGCP3Q96CW5 907 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 LRGUKQ96M69 825 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 CINPQ9BW66 212 aaPredicted RBP16.9■□□□□ 0.3
USP28-208ENST00000540438 AKTIPQ9H8T0 292 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 EFCAB1Q9HAE3 211 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 NSMCE4AQ9NXX6 385 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 EVLQ9UI08 416 aaPredicted RBP16.9■□□□□ 0.3
USP28-208ENST00000540438 DTNAQ9Y4J8 743 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 ZNF236Q9UL36 1845 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 NLRC5Q86WI3 1866 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 PRORSD1PA6NEY8 169 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 KATNA1O75449 491 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 RNASEH2AO75792 299 aaKnown RBP16.89■□□□□ 0.29
USP28-208ENST00000540438 INHAP05111 366 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 SERPINF2P08697 491 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 CORO1AP31146 461 aaKnown RBP16.89■□□□□ 0.29
USP28-208ENST00000540438 PRKAA2P54646 552 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 RNF219Q5W0B1 726 aaPredicted RBP16.89■□□□□ 0.29
USP28-208ENST00000540438 PDSS2Q86YH6 399 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 FBXO22Q8NEZ5 403 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 PPWD1Q96BP3 646 aaKnown RBP16.89■□□□□ 0.29
USP28-208ENST00000540438 CDKN2AIPNLQ96HQ2 116 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 PRICKLE1Q96MT3 831 aaPredicted RBP16.89■□□□□ 0.29
USP28-208ENST00000540438 UROC1Q96N76 676 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 SIKE1Q9BRV8 207 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 STN1Q9H668 368 aaKnown RBP16.89■□□□□ 0.29
USP28-208ENST00000540438 DNAJC15Q9Y5T4 150 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 MYO9BQ13459 2157 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 BTN3A1O00481 513 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 INSIG1O15503 277 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 COCHO43405 550 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 FKBP6O75344 327 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 EEF1DP29692 281 aaKnown RBP16.89■□□□□ 0.29
USP28-208ENST00000540438 GRIA2P42262 883 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 GNA12Q03113 381 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 TLR1Q15399 786 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 PIWIL4Q7Z3Z4 852 aaKnown RBP16.89■□□□□ 0.29
USP28-208ENST00000540438 CLDN19Q8N6F1 224 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 RP9Q8TA86 221 aaKnown RBP16.89■□□□□ 0.29
USP28-208ENST00000540438 LRTOMTQ8WZ04 291 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 CASD1Q96PB1 797 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 MRPL1Q9BYD6 325 aaKnown RBP16.89■□□□□ 0.29
USP28-208ENST00000540438 CATSPERZQ9NTU4 200 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 POLR3BQ9NW08 1133 aaPredicted RBP16.89■□□□□ 0.29
USP28-208ENST00000540438 DONSONQ9NYP3 566 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 SNX13Q9Y5W8 968 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 SPEGQ15772 3267 aa16.89■□□□□ 0.29
USP28-208ENST00000540438 ZNF839A8K0R7 811 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 GUCA1CO95843 209 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 GALTP07902 379 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 HOXD9P28356 352 aaPredicted RBP16.88■□□□□ 0.29
USP28-208ENST00000540438 CA5AP35218 305 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 SLC7A2P52569 658 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 PFKPQ01813 784 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 MED21Q13503 144 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 PIGGQ5H8A4 983 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 ARMC12Q5T9G4 340 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 SMG9Q9H0W8 520 aaKnown RBP16.88■□□□□ 0.29
USP28-208ENST00000540438 MID2Q9UJV3 735 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 AURKCQ9UQB9 309 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 PCDHB9Q9Y5E1 797 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 A0A087X1B8 175 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 CRCPO75575 148 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 CDK14O94921 469 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 CKMT2P17540 419 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 ME2P23368 584 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 NDST2P52849 883 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 CDKL1Q00532 357 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 ZNF678Q5SXM1 525 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 RETREG3Q86VR2 466 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 PQLC1Q8N2U9 271 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 GRIN3AQ8TCU5 1115 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 WFDC5Q8TCV5 224 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 DCUN1D1Q96GG9 259 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 UBXN10Q96LJ8 280 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 C8orf48Q96LL4 319 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 TEX37Q96LM6 180 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 C1orf74Q96LT6 269 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 SLAMF8Q9P0V8 285 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 STK39Q9UEW8 545 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 CCDC160A6NGH7 325 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms