RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 LRRC19Q9H756 370 aa11.61□□□□□ -0.55
CLSTN3-209ENST00000539982 KCTD5Q9NXV2 234 aa11.61□□□□□ -0.55
CLSTN3-209ENST00000539982 DACH1Q9UI36 760 aa11.61□□□□□ -0.55
CLSTN3-209ENST00000539982 VPS4AQ9UN37 437 aa11.61□□□□□ -0.55
CLSTN3-209ENST00000539982 SLC17A4Q9Y2C5 497 aa11.61□□□□□ -0.55
CLSTN3-209ENST00000539982 A8MU76 341 aa11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 K7EM74 188 aa11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 CREB3O43889 395 aa11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 STK17BO94768 372 aa11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 CYP1A1P04798 512 aaPredicted RBP11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 IVLP07476 585 aa11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 KRT3P12035 628 aa11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 NR1D1P20393 614 aa11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 RFC1P35251 1148 aaPredicted RBP11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 UQCRFS1P47985 274 aa11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 NDST2P52849 883 aa11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 COPB1P53618 953 aaKnown RBP11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 NSUN2Q08J23 767 aaKnown RBP eCLIP11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 CAPRIN2Q6IMN6 1127 aaKnown RBP11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 WDR74Q6RFH5 385 aaPredicted RBP11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 ASB18Q6ZVZ8 466 aa11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 CCDC13Q8IYE1 715 aa11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 CBARPQ8N350 705 aaPredicted RBP11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 TSEN2Q8NCE0 465 aaKnown RBP11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 GALNT11Q8NCW6 608 aa11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 OR10G6Q8NH81 332 aa11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 SSC4DQ8WTU2 575 aa11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 NUS1Q96E22 293 aa11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 NAA15Q9BXJ9 866 aaKnown RBP11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 DONSONQ9NYP3 566 aa11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 PCDHB3Q9Y5E6 796 aa11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 FHOD1Q9Y613 1164 aa11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 CENPEQ02224 2701 aa11.6□□□□□ -0.55
CLSTN3-209ENST00000539982 TEP1Q99973 2627 aaKnown RBP11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 RP1L1Q8IWN7 2480 aaPredicted RBP11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 TRAFD1O14545 582 aaPredicted RBP11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 FGF10O15520 208 aaPredicted RBP11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 PALMO75781 387 aa11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 GNLYP22749 145 aa11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 TEAD1P28347 426 aa11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 ACTR1BP42025 376 aa11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 STAT5AP42229 794 aa11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 NOP2P46087 812 aaKnown RBP11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 FASLGP48023 281 aa11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 POLD2P49005 469 aa11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 PPM1FP49593 454 aaPredicted RBP11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 ACTR1AP61163 376 aa11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 CDK3Q00526 305 aa11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 MAP7Q14244 749 aa11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 MAN2A1Q16706 1144 aa11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 SNAP47Q5SQN1 464 aa11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 KLHDC7AQ5VTJ3 777 aa11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 SCYL2Q6P3W7 929 aa11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 ZNF677Q86XU0 584 aa11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 ESX1Q8N693 406 aa11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 EPS8L1Q8TE68 723 aa11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 SCARF2Q96GP6 870 aaPredicted RBP11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 SLC38A3Q99624 504 aa11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 STK33Q9BYT3 514 aa11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 ZMYND15Q9H091 742 aa11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 NDST4Q9H3R1 872 aa11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 APMAPQ9HDC9 416 aa11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 B4GALT6Q9UBX8 382 aa11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 FZD10Q9ULW2 581 aa11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 PLEKHM1Q9Y4G2 1056 aa11.59□□□□□ -0.55
CLSTN3-209ENST00000539982 TRBV23OR9-2A0A075B6M9 112 aa11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 ARHGAP42A6NI28 874 aa11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 POLR1CO15160 346 aaPredicted RBP11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 DLGAP3O95886 979 aa11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 UCHL3P15374 230 aa11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 GPD1P21695 349 aa11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 F8A1P23610 371 aa11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 PAPOLAP51003 745 aaKnown RBP11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 SCNN1BP51168 640 aa11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 AIF1P55008 147 aa11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 CNGA3Q16281 694 aa11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 VWA3BQ502W6 1294 aa11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 WDR59Q6PJI9 974 aa11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 ZNF761Q86XN6 746 aaPredicted RBP11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 SFRP1Q8N474 314 aa11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 EFCAB3Q8N7B9 438 aa11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 SLC30A5Q8TAD4 765 aa11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 NCSTNQ92542 709 aa11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 SPOCK2Q92563 424 aa11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 NSMCE3Q96MG7 304 aa11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 C11orf70Q9BRQ4 267 aa11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 CINPQ9BW66 212 aaPredicted RBP11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 SLC39A8Q9C0K1 460 aa11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 IGSF5Q9NSI5 407 aa11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 CUEDC1Q9NWM3 386 aaPredicted RBP11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 CHMP5Q9NZZ3 219 aa11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 NOCTQ9UK39 431 aaKnown RBP11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 MRPS18BQ9Y676 258 aaKnown RBP11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 RPS6KL1Q9Y6S9 549 aa11.58□□□□□ -0.56
CLSTN3-209ENST00000539982 CACNA1DQ01668 2161 aa11.57□□□□□ -0.56
CLSTN3-209ENST00000539982 SPENQ96T58 3664 aaKnown RBP11.57□□□□□ -0.56
CLSTN3-209ENST00000539982 A0A1W2PQ67 120 aa11.57□□□□□ -0.56
CLSTN3-209ENST00000539982 TTLL8A6PVC2 850 aa11.57□□□□□ -0.56
CLSTN3-209ENST00000539982 F8VZ95 297 aa11.57□□□□□ -0.56
CLSTN3-209ENST00000539982 HEXIM1O94992 359 aaKnown RBP11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms