RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 TMEM88BA6NKF7 163 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 RNF103O00237 685 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 ASNA1O43681 348 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 PLIN3O60664 434 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 ADRA1BP35368 520 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 NR2C2P49116 596 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 MGAT3Q09327 533 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 PPM1JQ5JR12 505 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 PID1Q7Z2X4 250 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 LRRTM3Q86VH5 581 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 TMEM86AQ8N2M4 240 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 ZCCHC7Q8N3Z6 543 aaKnown RBP13.99□□□□□ -0.17
LIG1-203ENST00000536218 KCTD13Q8WZ19 329 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 QKIQ96PU8 341 aaKnown RBP eCLIP13.99□□□□□ -0.17
LIG1-203ENST00000536218 IL12RB2Q99665 862 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 EFCAB1Q9HAE3 211 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 ZNF358Q9NW07 568 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 PTBP2Q9UKA9 531 aaKnown RBP13.99□□□□□ -0.17
LIG1-203ENST00000536218 USP3Q9Y6I4 520 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 ZNF236Q9UL36 1845 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 LOC105371267A0A1B0GV96 52 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 H0YJX3 145 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 MYCP01106 439 aaPredicted RBP13.99□□□□□ -0.17
LIG1-203ENST00000536218 DDX5P17844 614 aaKnown RBP13.99□□□□□ -0.17
LIG1-203ENST00000536218 ERCC2P18074 760 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 CXCR2P25025 360 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 PCSK1P29120 753 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 RALGPS2Q86X27 583 aaPredicted RBP13.99□□□□□ -0.17
LIG1-203ENST00000536218 METTL23Q86XA0 190 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 FAM110BQ8TC76 370 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 RTP4Q96DX8 246 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 RTP3Q9BQQ7 232 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 EFHD1Q9BUP0 239 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 NEK6Q9HC98 313 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 PSME2Q9UL46 239 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 CDH9Q9ULB4 789 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 CNOT6Q9ULM6 557 aaKnown RBP13.99□□□□□ -0.17
LIG1-203ENST00000536218 CDY1Q9Y6F8 540 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 TPP1O14773 563 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 B4GAT1O43505 415 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 IDH3BO43837 385 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 USP12O75317 370 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 GCATO75600 419 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 UBL4AP11441 157 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 ODC1P11926 461 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 TM4SF4P48230 202 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 SLC13A2Q13183 592 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 HMBOX1Q6NT76 420 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 EPGNQ6UW88 154 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 UNC5AQ6ZN44 842 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 TDRD5Q8NAT2 981 aaKnown RBP13.99□□□□□ -0.17
LIG1-203ENST00000536218 RP9Q8TA86 221 aaKnown RBP13.99□□□□□ -0.17
LIG1-203ENST00000536218 LPGAT1Q92604 370 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 SMARCD1Q96GM5 515 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 MUC3BQ9H195 1237 aa13.99□□□□□ -0.17
LIG1-203ENST00000536218 ARIH1Q9Y4X5 557 aaPredicted RBP13.99□□□□□ -0.17
LIG1-203ENST00000536218 A0A0U1RQF3 1178 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 ZBBXA8MT70 800 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 TTC34A8MYJ7 566 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 TRIM38O00635 465 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 PHGDHO43175 533 aaKnown RBP13.98□□□□□ -0.17
LIG1-203ENST00000536218 MFN2O95140 757 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 CAPNS1P04632 268 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 MAGP20916 626 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 PSMB4P28070 264 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 NME5P56597 212 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 TPI1P60174 286 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 EML3Q32P44 896 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 UGT3A1Q6NUS8 523 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 CES3Q6UWW8 571 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 LAYNQ6UX15 382 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 OR10T2Q8NGX3 314 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 EPS8L2Q9H6S3 715 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 WDR27A2RRH5 827 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 SNPHO15079 494 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 NAT2P11245 290 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 MERTKQ12866 999 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 CEP78Q5JTW2 689 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 RSBN1Q5VWQ0 802 aaPredicted RBP13.98□□□□□ -0.17
LIG1-203ENST00000536218 OVOS1Q6IE37 1185 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 LRRC8EQ6NSJ5 796 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 CELF6Q96J87 481 aaKnown RBP13.98□□□□□ -0.17
LIG1-203ENST00000536218 SLC2A13Q96QE2 648 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 SLC7A5P2Q9GIP4 190 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 TKTL2Q9H0I9 626 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 WDCPQ9H6R7 721 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 DNMT3BQ9UBC3 853 aaKnown RBP13.98□□□□□ -0.17
LIG1-203ENST00000536218 PRG3Q9Y2Y8 225 aaPredicted RBP13.98□□□□□ -0.17
LIG1-203ENST00000536218 SCN10AQ9Y5Y9 1956 aa13.98□□□□□ -0.17
LIG1-203ENST00000536218 A0A0A0MRY4 1105 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 RPL9P32969 192 aaKnown RBP13.97□□□□□ -0.17
LIG1-203ENST00000536218 SMU1Q2TAY7 513 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 SDHAF4Q5VUM1 108 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 ZNF534Q76KX8 674 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 SCN4BQ8IWT1 228 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 ZFP90Q8TF47 636 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 NT5C3BQ969T7 300 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 SPATA13Q96N96 652 aa13.97□□□□□ -0.17
LIG1-203ENST00000536218 UPF3AQ9H1J1 476 aaKnown RBP13.97□□□□□ -0.17
LIG1-203ENST00000536218 PLAC1Q9HBJ0 212 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms