RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 CSNK1G3Q9Y6M4 447 aa12.96□□□□□ -0.33
VPS28-216ENST00000533806 ARID1BQ8NFD5 2236 aaPredicted RBP12.95□□□□□ -0.34
VPS28-216ENST00000533806 RGSL1A5PLK6 1076 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 GOLGA6L9A6NEM1 432 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 SCAMP1O15126 338 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 KCNN4O15554 427 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 TNFSF14O43557 240 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 GCATO75600 419 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 ZNF189O75820 626 aaPredicted RBP12.95□□□□□ -0.34
VPS28-216ENST00000533806 FUCA1P04066 466 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 TSHRP16473 764 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 JUNDP17535 347 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 ADRA1AP35348 466 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 HK3P52790 923 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 MPP3Q13368 585 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 OASLQ15646 514 aaKnown RBP12.95□□□□□ -0.34
VPS28-216ENST00000533806 PCSK7Q16549 785 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 PROX2Q3B8N5 592 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 INAVAQ3KP66 663 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 DENND2CQ68D51 928 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 ADAMTSL4Q6UY14 1074 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 RANBP10Q6VN20 620 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 PHACTR4Q8IZ21 702 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 NRSN1Q8IZ57 195 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 OR4C6Q8NH72 309 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 BTN2A2Q8WVV5 523 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 SCAMP4Q969E2 229 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 RTP4Q96DX8 246 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 SPATA13Q96N96 652 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 ALS2CR12Q96Q35 445 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 CLPBQ9H078 707 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 SPO11Q9Y5K1 396 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 DGKBQ9Y6T7 804 aa12.95□□□□□ -0.34
VPS28-216ENST00000533806 COL5A1P20908 1838 aaPredicted RBP12.95□□□□□ -0.34
VPS28-216ENST00000533806 LY6G6EA0A0G2JKS1 128 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 C1orf232A0A0U1RR37 186 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 TNFRSF10CO14798 259 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 SIGLEC6O43699 453 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 LIASO43766 372 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 FTH1P19P0C7X4 201 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 PIRTP0C851 137 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 HTR1BP28222 390 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 CHRNA4P43681 627 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 SPINT3P49223 89 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 GDF10P55107 478 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 SRP54P61011 504 aaKnown RBP12.94□□□□□ -0.34
VPS28-216ENST00000533806 SHC2P98077 582 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 PPARDQ03181 441 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 MSLNQ13421 630 aaPredicted RBP12.94□□□□□ -0.34
VPS28-216ENST00000533806 SLC1A5Q15758 541 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 SIRPB2Q5JXA9 342 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 HENMT1Q5T8I9 393 aaKnown RBP12.94□□□□□ -0.34
VPS28-216ENST00000533806 ENPP7Q6UWV6 458 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 LYSMD3Q7Z3D4 306 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 HEATR4Q86WZ0 1026 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 RBFAQ8N0V3 343 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 OR56A4Q8NGH8 313 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 CCDC110Q8TBZ0 833 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 ATG4AQ8WYN0 398 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 OR1E3Q8WZA6 343 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 TSACCQ96A04 125 aaPredicted RBP12.94□□□□□ -0.34
VPS28-216ENST00000533806 AP2M1Q96CW1 435 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 SCARF2Q96GP6 870 aaPredicted RBP12.94□□□□□ -0.34
VPS28-216ENST00000533806 WDR92Q96MX6 357 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 AGAP2Q99490 1192 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 FERMT1Q9BQL6 677 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 LRRC61Q9BV99 259 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 FRMD8P1Q9BZ68 369 aaPredicted RBP12.94□□□□□ -0.34
VPS28-216ENST00000533806 WDR26Q9H7D7 661 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 ZFYVE1Q9HBF4 777 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 FGF22Q9HCT0 170 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 NLGN3Q9NZ94 848 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 NFKBIL1Q9UBC1 381 aaPredicted RBP12.94□□□□□ -0.34
VPS28-216ENST00000533806 RSPH14Q9UHP6 348 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 CNOT6Q9ULM6 557 aaKnown RBP12.94□□□□□ -0.34
VPS28-216ENST00000533806 U3KQA8 63 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 AKAP13Q12802 2813 aa12.94□□□□□ -0.34
VPS28-216ENST00000533806 CHD8Q9HCK8 2581 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 FAM221BA6H8Z2 402 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 NEMP2A6NFY4 417 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 LMO7DNF2Z398 122 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 F5H423 210 aaPredicted RBP12.93□□□□□ -0.34
VPS28-216ENST00000533806 CACNB4O00305 520 aaPredicted RBP12.93□□□□□ -0.34
VPS28-216ENST00000533806 TPP1O14773 563 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 AURKAO14965 403 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 AQP9O43315 295 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 ANXA9O76027 345 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 LDOC1O95751 146 aaPredicted RBP12.93□□□□□ -0.34
VPS28-216ENST00000533806 CEACAM5P06731 702 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 MYCLP1P12525 358 aaPredicted RBP12.93□□□□□ -0.34
VPS28-216ENST00000533806 PSMB4P28070 264 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 CDK3Q00526 305 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 SEL1L2Q5TEA6 688 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 KCTD11Q693B1 232 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 ITPRIPL1Q6GPH6 555 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 DENND5AQ6IQ26 1287 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 RAB44Q7Z6P3 723 aaPredicted RBP12.93□□□□□ -0.34
VPS28-216ENST00000533806 TTC30BQ8N4P2 665 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 FAM71DQ8N9W8 422 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 FAM181AQ8N9Y4 354 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms