RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 SELENONQ9NZV5 590 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 ITM2BQ9Y287 266 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 RRP15Q9Y3B9 282 aaKnown RBP3.37□□□□□ -1.87
CD44-229ENST00000528672 WNT6Q9Y6F9 365 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 ZNF644Q9H582 1327 aaPredicted RBP3.37□□□□□ -1.87
CD44-229ENST00000528672 C11orf97A0A1B0GVM6 126 aaPredicted RBP3.36□□□□□ -1.87
CD44-229ENST00000528672 TRBC2A0A5B9 178 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 TRIM64A6NGJ6 449 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 TRIM64BA6NI03 449 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 A6NL46 340 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 UBE2Q2LH0YL09 131 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 H7C1Q1 480 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 EBAG9O00559 213 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 PSMA7O14818 248 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 PAPSS1O43252 624 aaPredicted RBP3.36□□□□□ -1.87
CD44-229ENST00000528672 GPC4O75487 556 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 JTBO76095 146 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 LETM1O95202 739 aaPredicted RBP3.36□□□□□ -1.87
CD44-229ENST00000528672 SLU7O95391 586 aaKnown RBP3.36□□□□□ -1.87
CD44-229ENST00000528672 BAG2O95816 211 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 ATP5BP06576 529 aaKnown RBP3.36□□□□□ -1.87
CD44-229ENST00000528672 TPOP07202 933 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 TRIM21P19474 475 aaKnown RBP3.36□□□□□ -1.87
CD44-229ENST00000528672 ITGAXP20702 1163 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 EPHB2P29323 1055 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 TACR3P29371 465 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 CLCN3P51790 818 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 CLCNKBP51801 687 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 PNLIPRP2P54317 469 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 TMPRSS3P57727 454 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 MECOMQ03112 1051 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 SLC18A2Q05940 514 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 ALCAMQ13740 583 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 SHBQ15464 509 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 PTPN14Q15678 1187 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 ADIPOQQ15848 244 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 PCGF3Q3KNV8 242 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 CRY2Q49AN0 593 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 SYTL3Q4VX76 610 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 TBC1D9BQ66K14 1250 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 PMS2CLQ68D20 193 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 HIST2H2BCQ6DN03 193 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 HIST2H2BDQ6DRA6 164 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 SUMO4Q6EEV6 95 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 LRRC8EQ6NSJ5 796 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 CES5AQ6NT32 575 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 RBM44Q6ZP01 1051 aaKnown RBP3.36□□□□□ -1.87
CD44-229ENST00000528672 CYB5R4Q7L1T6 521 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 CCDC91Q7Z6B0 441 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 IGFN1Q86VF2 1251 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 CCDC25Q86WR0 208 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 METTL23Q86XA0 190 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 OR4N2Q8NGD1 307 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 RASSF8Q8NHQ8 419 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 PIGOQ8TEQ8 1089 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 DEPDC1BQ8WUY9 529 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 ATOH1Q92858 354 aaPredicted RBP3.36□□□□□ -1.87
CD44-229ENST00000528672 MAP4K1Q92918 833 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 LRRC59Q96AG4 307 aaKnown RBP3.36□□□□□ -1.87
CD44-229ENST00000528672 EME1Q96AY2 570 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 PTERQ96BW5 349 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 MOAP1Q96BY2 351 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 ZC3HAV1LQ96H79 300 aaKnown RBP3.36□□□□□ -1.87
CD44-229ENST00000528672 DGAT2Q96PD7 388 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 CITED2Q99967 270 aaPredicted RBP3.36□□□□□ -1.87
CD44-229ENST00000528672 GPATCH1Q9BRR8 931 aaKnown RBP3.36□□□□□ -1.87
CD44-229ENST00000528672 HGH1Q9BTY7 390 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 SEMA4CQ9C0C4 833 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 ACTR5Q9H9F9 607 aaPredicted RBP3.36□□□□□ -1.87
CD44-229ENST00000528672 TMEM184CQ9NVA4 438 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 WSB2Q9NYS7 404 aaPredicted RBP3.36□□□□□ -1.87
CD44-229ENST00000528672 PLEKHB1Q9UF11 243 aaPredicted RBP3.36□□□□□ -1.87
CD44-229ENST00000528672 PCSK1NQ9UHG2 260 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 AMACRQ9UHK6 382 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 ANAPC2Q9UJX6 822 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 R3HDM2Q9Y2K5 976 aaKnown RBP3.36□□□□□ -1.87
CD44-229ENST00000528672 CMAHPQ9Y471 501 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 LSM4Q9Y4Z0 139 aaKnown RBP3.36□□□□□ -1.87
CD44-229ENST00000528672 ZFP37Q9Y6Q3 630 aaPredicted RBP3.36□□□□□ -1.87
CD44-229ENST00000528672 MAU2Q9Y6X3 613 aa3.36□□□□□ -1.87
CD44-229ENST00000528672 A0A096LPK6 155 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 TCRBV21S2A2A0A5A6 115 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 DDTLA6NHG4 134 aaPredicted RBP3.35□□□□□ -1.87
CD44-229ENST00000528672 CGB1A6NKQ9 187 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 KLRF2D3W0D1 207 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 POC1B-GALNT4F8VUJ3 575 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 PI4K2BG5E9Z4 385 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 CPLX1O14810 134 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 WDR46O15213 610 aaKnown RBP3.35□□□□□ -1.87
CD44-229ENST00000528672 RNMTO43148 476 aaKnown RBP3.35□□□□□ -1.87
CD44-229ENST00000528672 DIAPH2O60879 1101 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 RBMXL2O75526 392 aaKnown RBP3.35□□□□□ -1.87
CD44-229ENST00000528672 TMCC1O94876 653 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 WNT1P04628 370 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 LCKP06239 509 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 ACTN1P12814 892 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 FDPSP14324 419 aaKnown RBP3.35□□□□□ -1.87
CD44-229ENST00000528672 ATP6V1B1P15313 513 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 CAPN2P17655 700 aa3.35□□□□□ -1.87
CD44-229ENST00000528672 CIITAP33076 1130 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms