RNA–Protein interactions for RNA: ENST00000525121.2

HMGB1P40-201, Transcript of high mobility group box 1 pseudogene 40, humanhuman

BASIC

Gene HMGB1P40, Length 540 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P40-201ENST00000525121 PEX6Q13608 980 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 LAMB3Q13751 1172 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 FZD2Q14332 565 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 ELOCQ15369 112 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 SLC1A5Q15758 541 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 CCNG2Q16589 344 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 SIRPB2Q5JXA9 342 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 PNCKQ6P2M8 343 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 KDELC1Q6UW63 502 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 ENPP7Q6UWV6 458 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 ADAMTSL4Q6UY14 1074 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 PPP1R21Q6ZMI0 780 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 Q6ZVL8 140 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 ERMP1Q7Z2K6 904 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 LYSMD3Q7Z3D4 306 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 RD3Q7Z3Z2 195 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 LINC00523Q86TU6 105 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 HEATR4Q86WZ0 1026 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 SPATS2Q86XZ4 545 aaKnown RBP5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 GATAD2AQ86YP4 633 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 HID1Q8IV36 788 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 REXO1L1PQ8IX06 675 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 PHACTR4Q8IZ21 702 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 SLC22A18ASQ8N1D0 253 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 FSTL5Q8N475 847 aaPredicted RBP5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 DNAAF3Q8N9W5 541 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 OR56A4Q8NGH8 313 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 BLOC1S5Q8TDH9 187 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 LMX1AQ8TE12 382 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 GRK7Q8WTQ7 553 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 C1orf54Q8WWF1 131 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 TADA1Q96BN2 335 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 OXNAD1Q96HP4 312 aaPredicted RBP5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 HIC2Q96JB3 615 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 BMFQ96LC9 184 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 TBATAQ96M53 351 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 NSMCE3Q96MG7 304 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 TRIB3Q96RU7 358 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 OSBPL9Q96SU4 736 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 NAPGQ99747 312 aaPredicted RBP5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 TBL1YQ9BQ87 522 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 ZSCAN5AQ9BUG6 496 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 DUSP23Q9BVJ7 150 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 SPATA16Q9BXB7 569 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 ZCCHC2Q9C0B9 1178 aaKnown RBP5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 FAM83DQ9H4H8 585 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 C10orf88Q9H8K7 445 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 USP29Q9HBJ7 922 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 PAK5Q9P286 719 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 CD84Q9UIB8 345 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 PYCARDQ9ULZ3 195 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 SNX12Q9UMY4 172 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 SHOC2Q9UQ13 582 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 APOBEC2Q9Y235 224 aaKnown RBP5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 R3HDM2Q9Y2K5 976 aaKnown RBP5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 OR1A2Q9Y585 309 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 GPR179Q6PRD1 2367 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 PIEZO1Q92508 2521 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 TNRC6BQ9UPQ9 1833 aaKnown RBP5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 OTOGLQ3ZCN5 2332 aa5.39□□□□□ -1.55
HMGB1P40-201ENST00000525121 SPAG17Q6Q759 2223 aa5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 LOC285095A0A1B0GVY8 99 aa5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 AP3B1O00203 1094 aa5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 TNFRSF10CO14798 259 aa5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 STX7O15400 261 aaKnown RBP5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 FFAR2O15552 330 aa5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 AQP9O43315 295 aa5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 TNFSF14O43557 240 aa5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 PIAS2O75928 621 aa5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 KCNK5O95279 499 aa5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 ASMTLO95671 621 aa5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 LDOC1O95751 146 aaPredicted RBP5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 AP2A1O95782 977 aa5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 AGTP01019 485 aa5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 ATP1A1P05023 1023 aaKnown RBP5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 HOXC4P09017 264 aaPredicted RBP5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 ATXN1LP0C7T5 689 aaKnown RBP5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 LPOP22079 712 aaPredicted RBP5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 DGKAP23743 735 aa5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 SPAM1P38567 509 aa5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 PAFAH1B1P43034 410 aa5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 CHRNA4P43681 627 aa5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 SPINT3P49223 89 aa5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 DUSP3P51452 185 aaPredicted RBP5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 HK3P52790 923 aa5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 SRP54P61011 504 aaKnown RBP5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 BASP1P80723 227 aaKnown RBP5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 SARNPP82979 210 aaKnown RBP5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 DAB2P98082 770 aa5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 CDK3Q00526 305 aa5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 PTSQ03393 145 aa5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 ILF3Q12906 894 aaKnown RBP eCLIP5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 BIRC2Q13490 618 aa5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 GTF2H3Q13889 308 aa5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 SEPT6Q14141 434 aa5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 TAF1AQ15573 450 aaPredicted RBP5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 OASLQ15646 514 aaKnown RBP5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 TRIP6Q15654 476 aaKnown RBP5.38□□□□□ -1.55
HMGB1P40-201ENST00000525121 ALG11Q2TAA5 492 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms