RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 SLC13A1Q9BZW2 595 aa15.99■□□□□ 0.15
NUP54-214ENST00000514307 CDH19Q9H159 772 aa15.99■□□□□ 0.15
NUP54-214ENST00000514307 SUDS3Q9H7L9 328 aaPredicted RBP15.99■□□□□ 0.15
NUP54-214ENST00000514307 KCNK12Q9HB15 430 aa15.99■□□□□ 0.15
NUP54-214ENST00000514307 SLC39A10Q9ULF5 831 aa15.99■□□□□ 0.15
NUP54-214ENST00000514307 PPM1HQ9ULR3 514 aa15.99■□□□□ 0.15
NUP54-214ENST00000514307 VWA7Q9Y334 891 aa15.99■□□□□ 0.15
NUP54-214ENST00000514307 NUP210Q8TEM1 1887 aaPredicted RBP15.99■□□□□ 0.15
NUP54-214ENST00000514307 C16orf96A6NNT2 1141 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 UPK3BL1B0FP48 263 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 C2CD4DB7Z1M9 353 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 UPK3BL2E5RIL1 263 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 KPNA3O00505 521 aaPredicted RBP15.98■□□□□ 0.15
NUP54-214ENST00000514307 SYNCRIPO60506 623 aaKnown RBP15.98■□□□□ 0.15
NUP54-214ENST00000514307 CLDN7O95471 211 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 STMN1P16949 149 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 DRD1P21728 446 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 VIPR1P32241 457 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 MC4RP32245 332 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 RPA3P35244 121 aaPredicted RBP15.98■□□□□ 0.15
NUP54-214ENST00000514307 GRSF1Q12849 480 aaKnown RBP eCLIP15.98■□□□□ 0.15
NUP54-214ENST00000514307 PTPRCAPQ14761 206 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 CDKN3Q16667 212 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 TAF1BQ53T94 588 aaPredicted RBP15.98■□□□□ 0.15
NUP54-214ENST00000514307 ZRANB3Q5FWF4 1079 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 KYAT3Q6YP21 454 aaKnown RBP15.98■□□□□ 0.15
NUP54-214ENST00000514307 RAPH1Q70E73 1250 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 TAS2R42Q7RTR8 314 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 TRMT11Q7Z4G4 463 aaKnown RBP15.98■□□□□ 0.15
NUP54-214ENST00000514307 STK40Q8N2I9 435 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 ISL2Q96A47 359 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 PBXIP1Q96AQ6 731 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 CHFRQ96EP1 664 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 GUCD1Q96NT3 240 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 KLF6Q99612 283 aaPredicted RBP15.98■□□□□ 0.15
NUP54-214ENST00000514307 PAIP2Q9BPZ3 127 aaKnown RBP15.98■□□□□ 0.15
NUP54-214ENST00000514307 CCDC68Q9H2F9 335 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 BPIFA1Q9NP55 256 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 PKD2L2Q9NZM6 624 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 GGT7Q9UJ14 662 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 ACOT9Q9Y305 439 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 COMMD10Q9Y6G5 202 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 STON1Q9Y6Q2 735 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 COL6A3P12111 3177 aa15.98■□□□□ 0.15
NUP54-214ENST00000514307 EYSQ5T1H1 3165 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 GMNCA6NCL1 334 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 SPECC1L-ADORA2AF8WAN1 911 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 TPP1O14773 563 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 SHOX2O60902 331 aaPredicted RBP15.97■□□□□ 0.15
NUP54-214ENST00000514307 GLRA3O75311 464 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 SLC4A1P02730 911 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 EPHX1P07099 455 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 FOSL2P15408 326 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 GABRB3P28472 473 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 CCNFP41002 786 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 PTGER3P43115 390 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 ELP6Q0PNE2 266 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 MPP2Q14168 576 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 TERF2Q15554 542 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 SMAD1Q15797 465 aaKnown RBP15.97■□□□□ 0.15
NUP54-214ENST00000514307 LEXMQ3ZCV2 418 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 FBXL19Q6PCT2 694 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 TRIM42Q8IWZ5 723 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 CHPFQ8IZ52 775 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 PIP4K2CQ8TBX8 421 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 ZNF398Q8TD17 642 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 MGARPQ8TDB4 240 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 DTX3LQ8TDB6 740 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 TCP10LQ8TDR4 215 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 RAB7BQ96AH8 199 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 ELMO2Q96JJ3 720 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 FAM129BQ96TA1 746 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 VPS11Q9H270 941 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 PRSS16Q9NQE7 514 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 FBXO6Q9NRD1 293 aaPredicted RBP15.97■□□□□ 0.15
NUP54-214ENST00000514307 SNX15Q9NRS6 342 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 POLR3BQ9NW08 1133 aaPredicted RBP15.97■□□□□ 0.15
NUP54-214ENST00000514307 SLC17A6Q9P2U8 582 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 FKBPLQ9UIM3 349 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 PLLPQ9Y342 182 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 CHD7Q9P2D1 2997 aa15.97■□□□□ 0.15
NUP54-214ENST00000514307 A0A087X1B8 175 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 A0A096LPK6 155 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 FAM95CA0A1B0GW59 222 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 CCL22O00626 93 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 IL1BP01584 269 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 ALDOAP04075 364 aaKnown RBP15.96■□□□□ 0.15
NUP54-214ENST00000514307 C2P06681 752 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 APOA4P06727 396 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 NEFHP12036 1026 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 ITGALP20701 1170 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 SAT1P21673 171 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 SP100P23497 879 aaPredicted RBP15.96■□□□□ 0.15
NUP54-214ENST00000514307 ITGB7P26010 798 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 LSP1P33241 339 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 SPAM1P38567 509 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 STC1P52823 247 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 RAB10P61026 200 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 MPP1Q00013 466 aa15.96■□□□□ 0.15
NUP54-214ENST00000514307 PTSQ03393 145 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms