RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 DLG2Q15700 870 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 SPATS1Q496A3 300 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 STYK1Q6J9G0 422 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 OR52E6Q96RD3 313 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 ZNF347Q96SE7 839 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 PI4K2AQ9BTU6 479 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 ZNF471Q9BX82 626 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 METTL8Q9H825 291 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 RBM47A0AV96 593 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 ELOVL7A1L3X0 281 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 PEX11AO75192 247 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 KAT7O95251 611 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 ASLP04424 464 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 PET100P0DJ07 73 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 PSKH1P11801 424 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 ANXA8P13928 327 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 SCNN1BP51168 640 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 TEAD4Q15561 434 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 DSELQ8IZU8 1212 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 METTL25Q8N6Q8 603 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 CIDECQ96AQ7 238 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 RNF31Q96EP0 1072 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 EBF2Q9HAK2 575 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 C3orf14Q9HBI5 128 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 IFT46Q9NQC8 304 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 NUDT15Q9NV35 164 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 M0R233 179 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 ACOX3O15254 700 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 NUDT14O95848 222 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 TSPAN5P62079 268 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 IRAK1BP1Q5VVH5 260 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 APTXQ7Z2E3 356 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 SATL1Q86VE3 508 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 DPF3Q92784 378 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 ACSF2Q96CM8 615 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 DMRTB1Q96MA1 342 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 SEMA3GQ9NS98 782 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 PDP1Q9P0J1 537 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 METP08581 1390 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 BIVM-ERCC5R4GMW8 1640 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 SLC25A12O75746 678 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 FSHRP23945 695 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 LCN1P31025 176 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 RGS6P49758 472 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 ELAVL2Q12926 359 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 UBAP2LQ14157 1087 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 PRKD1Q15139 912 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 PFKFB4Q16877 469 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 ZNF484Q5JVG2 852 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 CBR4Q8N4T8 237 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 SLC38A4Q969I6 547 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 NSMCE3Q96MG7 304 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 C1orf109Q9NX04 203 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 CALML5Q9NZT1 146 aa11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 SUCOQ9UBS9 1254 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 MRTO4Q9UKD2 239 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-217ENST00000512946 USP6P35125 1406 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 RIIAD1A6NNX1 92 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 CPNE3O75131 537 aaKnown RBP11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 SLC25A27O95847 323 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 CSN2P05814 226 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 PPP3R1P63098 170 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 TDGQ13569 410 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 KCNT2Q6UVM3 1135 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 ZNF720Q7Z2F6 126 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 FAM131BQ86XD5 332 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 CHERPQ8IWX8 916 aaKnown RBP11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 ING5Q8WYH8 240 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 LPGAT1Q92604 370 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 MRPS31Q92665 395 aaKnown RBP11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 MED8Q96G25 268 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 CNDP2Q96KP4 475 aaKnown RBP11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 KCTD7Q96MP8 289 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 POLR1EQ9GZS1 481 aaKnown RBP11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 COMMD4Q9H0A8 199 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 SEMA4BQ9NPR2 832 aaPredicted RBP11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 DNAJB9Q9UBS3 223 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 FSCN2O14926 492 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 HOXA2O43364 376 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 LIASO43766 372 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 OR1I1O60431 355 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 GJB6O95452 261 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 LTFP02788 710 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 UROSP10746 265 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 ADAM15Q13444 863 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 TIGD4Q8IY51 512 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 CPNE9Q8IYJ1 553 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 SDR16C5Q8N3Y7 309 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 CCDC54Q8NEL0 328 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 CHST13Q8NET6 341 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 PREBQ9HCU5 417 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 ZMYM5Q9UJ78 669 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 USP20Q9Y2K6 914 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 LRRC42Q9Y546 428 aa11.21□□□□□ -0.61
LIMCH1-217ENST00000512946 A0A0J9YYE9 177 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 TRIM64A6NGJ6 449 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 TRIM64BA6NI03 449 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 B8ZZF3 427 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 RP2O75695 350 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 IPO13O94829 963 aaKnown RBP11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms