RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 MMP25Q9NPA2 562 aa5.62□□□□□ -1.51
SF3B1-212ENST00000496458 SLC6A13Q9NSD5 602 aa5.62□□□□□ -1.51
SF3B1-212ENST00000496458 MCM9Q9NXL9 1143 aa5.62□□□□□ -1.51
SF3B1-212ENST00000496458 TTC7AQ9ULT0 858 aaPredicted RBP5.62□□□□□ -1.51
SF3B1-212ENST00000496458 AKR1B15C9JRZ8 316 aaPredicted RBP5.61□□□□□ -1.51
SF3B1-212ENST00000496458 UTYO14607 1347 aa5.61□□□□□ -1.51
SF3B1-212ENST00000496458 LINC01565O15544 149 aa5.61□□□□□ -1.51
SF3B1-212ENST00000496458 CDAP32320 146 aa5.61□□□□□ -1.51
SF3B1-212ENST00000496458 TMPOP42166 694 aaKnown RBP5.61□□□□□ -1.51
SF3B1-212ENST00000496458 HNRNPH2P55795 449 aaKnown RBP5.61□□□□□ -1.51
SF3B1-212ENST00000496458 RELQ04864 619 aaPredicted RBP5.61□□□□□ -1.51
SF3B1-212ENST00000496458 ARL16Q0P5N6 197 aa5.61□□□□□ -1.51
SF3B1-212ENST00000496458 CGNL1Q0VF96 1302 aa5.61□□□□□ -1.51
SF3B1-212ENST00000496458 TROAPQ12815 778 aa5.61□□□□□ -1.51
SF3B1-212ENST00000496458 FGFBP1Q14512 234 aa5.61□□□□□ -1.51
SF3B1-212ENST00000496458 GSTA3Q16772 222 aa5.61□□□□□ -1.51
SF3B1-212ENST00000496458 HSP90AB4PQ58FF6 505 aa5.61□□□□□ -1.51
SF3B1-212ENST00000496458 GGNBP1Q5YKI7 109 aa5.61□□□□□ -1.51
SF3B1-212ENST00000496458 MAB21L3Q8N8X9 362 aa5.61□□□□□ -1.51
SF3B1-212ENST00000496458 LNX1Q8TBB1 728 aaPredicted RBP5.61□□□□□ -1.51
SF3B1-212ENST00000496458 DUSP19Q8WTR2 217 aa5.61□□□□□ -1.51
SF3B1-212ENST00000496458 RRP36Q96EU6 259 aaKnown RBP5.61□□□□□ -1.51
SF3B1-212ENST00000496458 AGXT2Q9BYV1 514 aa5.61□□□□□ -1.51
SF3B1-212ENST00000496458 IFIH1Q9BYX4 1025 aaKnown RBP5.61□□□□□ -1.51
SF3B1-212ENST00000496458 BRF2Q9HAW0 419 aa5.61□□□□□ -1.51
SF3B1-212ENST00000496458 PCDH9Q9HC56 1237 aa5.61□□□□□ -1.51
SF3B1-212ENST00000496458 PCDHB16Q9NRJ7 776 aa5.61□□□□□ -1.51
SF3B1-212ENST00000496458 NAALADL1Q9UQQ1 740 aa5.61□□□□□ -1.51
SF3B1-212ENST00000496458 CEPT1Q9Y6K0 416 aa5.61□□□□□ -1.51
SF3B1-212ENST00000496458 PDS5AQ29RF7 1337 aaKnown RBP5.6□□□□□ -1.51
SF3B1-212ENST00000496458 A0A0B4J293 547 aa5.6□□□□□ -1.51
SF3B1-212ENST00000496458 A6NLC8 198 aa5.6□□□□□ -1.51
SF3B1-212ENST00000496458 CREB3O43889 395 aa5.6□□□□□ -1.51
SF3B1-212ENST00000496458 FTCDO95954 541 aa5.6□□□□□ -1.51
SF3B1-212ENST00000496458 KCNA5P22460 613 aa5.6□□□□□ -1.51
SF3B1-212ENST00000496458 RRM1P23921 792 aa5.6□□□□□ -1.51
SF3B1-212ENST00000496458 BDKRB2P30411 391 aa5.6□□□□□ -1.51
SF3B1-212ENST00000496458 HARS2P49590 506 aaKnown RBP5.6□□□□□ -1.51
SF3B1-212ENST00000496458 FUT6P51993 359 aa5.6□□□□□ -1.51
SF3B1-212ENST00000496458 RALBP1Q15311 655 aa5.6□□□□□ -1.51
SF3B1-212ENST00000496458 PLEKHA7Q6IQ23 1121 aa5.6□□□□□ -1.51
SF3B1-212ENST00000496458 DSTYKQ6XUX3 929 aa5.6□□□□□ -1.51
SF3B1-212ENST00000496458 FOXL2NBQ6ZUU3 175 aa5.6□□□□□ -1.51
SF3B1-212ENST00000496458 SMIM29Q86T20 159 aa5.6□□□□□ -1.51
SF3B1-212ENST00000496458 ARMC8Q8IUR7 673 aa5.6□□□□□ -1.51
SF3B1-212ENST00000496458 WDR63Q8IWG1 891 aa5.6□□□□□ -1.51
SF3B1-212ENST00000496458 KBTBD3Q8NAB2 608 aa5.6□□□□□ -1.51
SF3B1-212ENST00000496458 MAGEC3Q8TD91 643 aa5.6□□□□□ -1.51
SF3B1-212ENST00000496458 ZUFSPQ96AP4 578 aa5.6□□□□□ -1.51
SF3B1-212ENST00000496458 TTC14Q96N46 770 aa5.6□□□□□ -1.51
SF3B1-212ENST00000496458 NR1H4Q96RI1 486 aaPredicted RBP5.6□□□□□ -1.51
SF3B1-212ENST00000496458 EPYCQ99645 322 aa5.6□□□□□ -1.51
SF3B1-212ENST00000496458 SH3GL2Q99962 352 aa5.6□□□□□ -1.51
SF3B1-212ENST00000496458 EIF2AK1Q9BQI3 630 aaKnown RBP5.6□□□□□ -1.51
SF3B1-212ENST00000496458 CSTL1Q9H114 145 aa5.6□□□□□ -1.51
SF3B1-212ENST00000496458 MKLN1Q9UL63 735 aa5.6□□□□□ -1.51
SF3B1-212ENST00000496458 HMGB1P1B2RPK0 211 aaPredicted RBP5.59□□□□□ -1.51
SF3B1-212ENST00000496458 LMX1BO60663 402 aa5.59□□□□□ -1.51
SF3B1-212ENST00000496458 MCM3P25205 808 aa5.59□□□□□ -1.51
SF3B1-212ENST00000496458 EPHA8P29322 1005 aaPredicted RBP5.59□□□□□ -1.51
SF3B1-212ENST00000496458 EIF3BP55884 814 aaKnown RBP5.59□□□□□ -1.51
SF3B1-212ENST00000496458 DRAP1Q14919 205 aaPredicted RBP5.59□□□□□ -1.51
SF3B1-212ENST00000496458 KRT24Q2M2I5 525 aa5.59□□□□□ -1.51
SF3B1-212ENST00000496458 KCNT1Q5JUK3 1230 aa5.59□□□□□ -1.51
SF3B1-212ENST00000496458 STPG1Q5TH74 334 aa5.59□□□□□ -1.51
SF3B1-212ENST00000496458 GFI1BQ5VTD9 330 aa5.59□□□□□ -1.51
SF3B1-212ENST00000496458 IRAK1BP1Q5VVH5 260 aa5.59□□□□□ -1.51
SF3B1-212ENST00000496458 PQLC2Q6ZP29 291 aa5.59□□□□□ -1.51
SF3B1-212ENST00000496458 SLC9B2Q86UD5 537 aa5.59□□□□□ -1.51
SF3B1-212ENST00000496458 CCDC13Q8IYE1 715 aa5.59□□□□□ -1.51
SF3B1-212ENST00000496458 ZNF34Q8IZ26 560 aa5.59□□□□□ -1.51
SF3B1-212ENST00000496458 LMNTD1Q8N9Z9 388 aa5.59□□□□□ -1.51
SF3B1-212ENST00000496458 BBS10Q8TAM1 723 aa5.59□□□□□ -1.51
SF3B1-212ENST00000496458 SLC20A1Q8WUM9 679 aa5.59□□□□□ -1.51
SF3B1-212ENST00000496458 GTF3C6Q969F1 213 aa5.59□□□□□ -1.51
SF3B1-212ENST00000496458 CMKLR1Q99788 373 aa5.59□□□□□ -1.51
SF3B1-212ENST00000496458 KIF9Q9HAQ2 790 aa5.59□□□□□ -1.51
SF3B1-212ENST00000496458 SDF2L1Q9HCN8 221 aa5.59□□□□□ -1.51
SF3B1-212ENST00000496458 MDFICQ9P1T7 246 aa5.59□□□□□ -1.51
SF3B1-212ENST00000496458 INTS6Q9UL03 887 aaKnown RBP5.59□□□□□ -1.51
SF3B1-212ENST00000496458 AMDHD2Q9Y303 409 aa5.59□□□□□ -1.51
SF3B1-212ENST00000496458 CAPN7Q9Y6W3 813 aa5.59□□□□□ -1.51
SF3B1-212ENST00000496458 GOLGA6L9A6NEM1 432 aa5.58□□□□□ -1.52
SF3B1-212ENST00000496458 VCYO14598 125 aa5.58□□□□□ -1.52
SF3B1-212ENST00000496458 AGR2O95994 175 aa5.58□□□□□ -1.52
SF3B1-212ENST00000496458 CDH1P12830 882 aa5.58□□□□□ -1.52
SF3B1-212ENST00000496458 HLA-DOBP13765 273 aa5.58□□□□□ -1.52
SF3B1-212ENST00000496458 S1PR1P21453 382 aa5.58□□□□□ -1.52
SF3B1-212ENST00000496458 IRX6P78412 446 aaPredicted RBP5.58□□□□□ -1.52
SF3B1-212ENST00000496458 USP41Q3LFD5 358 aa5.58□□□□□ -1.52
SF3B1-212ENST00000496458 C6orf141Q5SZD1 244 aa5.58□□□□□ -1.52
SF3B1-212ENST00000496458 ACAD10Q6JQN1 1059 aa5.58□□□□□ -1.52
SF3B1-212ENST00000496458 GFRALQ6UXV0 394 aa5.58□□□□□ -1.52
SF3B1-212ENST00000496458 GDPD4Q6W3E5 623 aa5.58□□□□□ -1.52
SF3B1-212ENST00000496458 MEX3BQ6ZN04 569 aaKnown RBP5.58□□□□□ -1.52
SF3B1-212ENST00000496458 TMEM219Q86XT9 240 aa5.58□□□□□ -1.52
SF3B1-212ENST00000496458 CNTROBQ8N137 903 aa5.58□□□□□ -1.52
SF3B1-212ENST00000496458 NR4A3Q92570 626 aa5.58□□□□□ -1.52
SF3B1-212ENST00000496458 TMEM47Q9BQJ4 181 aa5.58□□□□□ -1.52
SF3B1-212ENST00000496458 USP44Q9H0E7 712 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms